miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24667 5' -52.4 NC_005264.1 + 84072 0.66 0.983498
Target:  5'- cGCCCCcUGGCUCaugCggagcAGCGGGCgCAUc -3'
miRNA:   3'- -CGGGGuACUGAGaa-Ga----UUGCUCG-GUA- -5'
24667 5' -52.4 NC_005264.1 + 86510 0.66 0.983498
Target:  5'- aGCgCCCAUgGACUUUaCUAuacagcgaAUGAGCCAg -3'
miRNA:   3'- -CG-GGGUA-CUGAGAaGAU--------UGCUCGGUa -5'
24667 5' -52.4 NC_005264.1 + 32360 0.66 0.981467
Target:  5'- uGCUUCggGGCUgUUCUGGCGAggauGCCGg -3'
miRNA:   3'- -CGGGGuaCUGAgAAGAUUGCU----CGGUa -5'
24667 5' -52.4 NC_005264.1 + 151387 0.66 0.981467
Target:  5'- uGCUUCggGGCUgUUCUGGCGAggauGCCGg -3'
miRNA:   3'- -CGGGGuaCUGAgAAGAUUGCU----CGGUa -5'
24667 5' -52.4 NC_005264.1 + 151921 0.66 0.974247
Target:  5'- gGCUCCAUGACg---CcAACGAGCUg- -3'
miRNA:   3'- -CGGGGUACUGagaaGaUUGCUCGGua -5'
24667 5' -52.4 NC_005264.1 + 63427 0.66 0.971438
Target:  5'- cGCCCgAUGGCgCUUU--GCGuGCCAg -3'
miRNA:   3'- -CGGGgUACUGaGAAGauUGCuCGGUa -5'
24667 5' -52.4 NC_005264.1 + 98892 0.67 0.968415
Target:  5'- aGCCCUAguUGACgagauaUCUAGCGAGCa-- -3'
miRNA:   3'- -CGGGGU--ACUGaga---AGAUUGCUCGgua -5'
24667 5' -52.4 NC_005264.1 + 11123 0.67 0.961702
Target:  5'- uGCCCCAUGAUUggUUUAA-GGGCCc- -3'
miRNA:   3'- -CGGGGUACUGAgaAGAUUgCUCGGua -5'
24667 5' -52.4 NC_005264.1 + 130150 0.67 0.961702
Target:  5'- uGCCCCAUGAUUggUUUAA-GGGCCc- -3'
miRNA:   3'- -CGGGGUACUGAgaAGAUUgCUCGGua -5'
24667 5' -52.4 NC_005264.1 + 107580 0.68 0.949875
Target:  5'- cGCCCCA--GCUCUUCgUGGCG-GUCGc -3'
miRNA:   3'- -CGGGGUacUGAGAAG-AUUGCuCGGUa -5'
24667 5' -52.4 NC_005264.1 + 42852 0.68 0.945446
Target:  5'- cGCCCCAggGGCUUccUCUAAguccuCGAGCCc- -3'
miRNA:   3'- -CGGGGUa-CUGAGa-AGAUU-----GCUCGGua -5'
24667 5' -52.4 NC_005264.1 + 161878 0.68 0.945446
Target:  5'- cGCCCCAggGGCUUccUCUAAguccuCGAGCCc- -3'
miRNA:   3'- -CGGGGUa-CUGAGa-AGAUU-----GCUCGGua -5'
24667 5' -52.4 NC_005264.1 + 68971 0.69 0.907377
Target:  5'- cGCCgCC-UGGCUCgccagcUUAGCGGGCCAg -3'
miRNA:   3'- -CGG-GGuACUGAGaa----GAUUGCUCGGUa -5'
24667 5' -52.4 NC_005264.1 + 103106 1.09 0.005893
Target:  5'- cGCCCCAUGACUCUUCUAACGAGCCAUg -3'
miRNA:   3'- -CGGGGUACUGAGAAGAUUGCUCGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.