miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24668 3' -54.6 NC_005264.1 + 1189 0.74 0.596198
Target:  5'- gGUACGcagcggaccgggCGUCCGCgGCCAUGGCUGc -3'
miRNA:   3'- gCAUGCuaa---------GUAGGCG-CGGUACCGGC- -5'
24668 3' -54.6 NC_005264.1 + 1377 0.67 0.920414
Target:  5'- gGUACGAUgCAUCCuGCGCgcgucgCAuucccguacgaccccUGGCCGg -3'
miRNA:   3'- gCAUGCUAaGUAGG-CGCG------GU---------------ACCGGC- -5'
24668 3' -54.6 NC_005264.1 + 4996 0.73 0.63288
Target:  5'- uCGU-CGuucUCGUCCGCGCCggGGUCGc -3'
miRNA:   3'- -GCAuGCua-AGUAGGCGCGGuaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 5035 0.66 0.947987
Target:  5'- --cACGAggu-UCCGCGUCGUGGgCGc -3'
miRNA:   3'- gcaUGCUaaguAGGCGCGGUACCgGC- -5'
24668 3' -54.6 NC_005264.1 + 6168 0.71 0.781107
Target:  5'- gCGUgcACGAUguggggCAcgCCGguCGCCAUGGCCGu -3'
miRNA:   3'- -GCA--UGCUAa-----GUa-GGC--GCGGUACCGGC- -5'
24668 3' -54.6 NC_005264.1 + 6203 0.66 0.947987
Target:  5'- nGUGCGAgacgCGUCCuuugacccccCGCCGcGGCCGc -3'
miRNA:   3'- gCAUGCUaa--GUAGGc---------GCGGUaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 6728 0.68 0.900053
Target:  5'- gCGUcGCGGUaC-UCCGCGgCGUGGCgCGg -3'
miRNA:   3'- -GCA-UGCUAaGuAGGCGCgGUACCG-GC- -5'
24668 3' -54.6 NC_005264.1 + 9315 0.73 0.673609
Target:  5'- uGUACGAaagguuccgUUCGUCCcCGCCAggggcGGCCGc -3'
miRNA:   3'- gCAUGCU---------AAGUAGGcGCGGUa----CCGGC- -5'
24668 3' -54.6 NC_005264.1 + 11550 0.74 0.622676
Target:  5'- gGUGCGAUUCAgagcCCGCGau-UGGCCu -3'
miRNA:   3'- gCAUGCUAAGUa---GGCGCgguACCGGc -5'
24668 3' -54.6 NC_005264.1 + 17462 0.66 0.952137
Target:  5'- uGUACGGUUUcacaGUaagCGCGUC-UGGCCGu -3'
miRNA:   3'- gCAUGCUAAG----UAg--GCGCGGuACCGGC- -5'
24668 3' -54.6 NC_005264.1 + 23022 0.69 0.857724
Target:  5'- gGUACGcguUUCGUCC-CGCgAcGGCCGa -3'
miRNA:   3'- gCAUGCu--AAGUAGGcGCGgUaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 30702 0.67 0.91816
Target:  5'- uGUGCGGUUCAgacgagUCCGCGCUccGuuCGg -3'
miRNA:   3'- gCAUGCUAAGU------AGGCGCGGuaCcgGC- -5'
24668 3' -54.6 NC_005264.1 + 31150 0.69 0.865318
Target:  5'- cCGUGCGGUUCuagguUUCGUGUgAcgggGGCCGg -3'
miRNA:   3'- -GCAUGCUAAGu----AGGCGCGgUa---CCGGC- -5'
24668 3' -54.6 NC_005264.1 + 38164 0.67 0.934138
Target:  5'- gCGUGCGAcuaCcgCCGCGCUGUGGg-- -3'
miRNA:   3'- -GCAUGCUaa-GuaGGCGCGGUACCggc -5'
24668 3' -54.6 NC_005264.1 + 38453 0.66 0.952137
Target:  5'- gGUGUGAaUCAUCCGCGa---GGCCGc -3'
miRNA:   3'- gCAUGCUaAGUAGGCGCgguaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 41756 0.66 0.956059
Target:  5'- -cUGCGAUUCAUCgGagGUCAcGGCCu -3'
miRNA:   3'- gcAUGCUAAGUAGgCg-CGGUaCCGGc -5'
24668 3' -54.6 NC_005264.1 + 42588 0.74 0.582006
Target:  5'- cCGUGCGGgaugUUGUgcaaccCCGCaGCCAUGGCCGc -3'
miRNA:   3'- -GCAUGCUa---AGUA------GGCG-CGGUACCGGC- -5'
24668 3' -54.6 NC_005264.1 + 43843 0.68 0.912359
Target:  5'- gCGUACG-UUUuUUgGCGCUggGGCCGg -3'
miRNA:   3'- -GCAUGCuAAGuAGgCGCGGuaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 48197 0.77 0.42858
Target:  5'- gCGUGCucGUUCGUCUGUGCCG-GGCCGa -3'
miRNA:   3'- -GCAUGc-UAAGUAGGCGCGGUaCCGGC- -5'
24668 3' -54.6 NC_005264.1 + 49343 0.68 0.912359
Target:  5'- uGUACGAgggUCGcgguuggcacUCgCGCGaCCGUGGCaCGa -3'
miRNA:   3'- gCAUGCUa--AGU----------AG-GCGC-GGUACCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.