miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24668 5' -56.6 NC_005264.1 + 837 0.66 0.899013
Target:  5'- uCUGUCUCUGGCGUgccccACGAuCCGc-- -3'
miRNA:   3'- cGGCAGAGACCGCGac---UGCU-GGCaaa -5'
24668 5' -56.6 NC_005264.1 + 81043 0.66 0.898372
Target:  5'- cGCCGUCUacccucaCUGGCGCgugguuuaucGACGgcaACCGg-- -3'
miRNA:   3'- -CGGCAGA-------GACCGCGa---------CUGC---UGGCaaa -5'
24668 5' -56.6 NC_005264.1 + 17564 0.66 0.892499
Target:  5'- uGgCGUCUCgagGGCGa-GACG-CCGUUg -3'
miRNA:   3'- -CgGCAGAGa--CCGCgaCUGCuGGCAAa -5'
24668 5' -56.6 NC_005264.1 + 35032 0.66 0.88576
Target:  5'- gGCCGUC-CUGGC-C-GACGcccGCCGUUc -3'
miRNA:   3'- -CGGCAGaGACCGcGaCUGC---UGGCAAa -5'
24668 5' -56.6 NC_005264.1 + 131726 0.66 0.88576
Target:  5'- uGCUGgcgCUCUGGCGCUacaaugcgcuacGGCGACa---- -3'
miRNA:   3'- -CGGCa--GAGACCGCGA------------CUGCUGgcaaa -5'
24668 5' -56.6 NC_005264.1 + 154059 0.66 0.88576
Target:  5'- gGCCGUC-CUGGC-C-GACGcccGCCGUUc -3'
miRNA:   3'- -CGGCAGaGACCGcGaCUGC---UGGCAAa -5'
24668 5' -56.6 NC_005264.1 + 149247 0.66 0.878799
Target:  5'- gGCCGg-UgUGGCGCUGG-GGCCGa-- -3'
miRNA:   3'- -CGGCagAgACCGCGACUgCUGGCaaa -5'
24668 5' -56.6 NC_005264.1 + 126297 0.66 0.878799
Target:  5'- uGCCGcUUUCgGGCGC--GCGGCCGa-- -3'
miRNA:   3'- -CGGC-AGAGaCCGCGacUGCUGGCaaa -5'
24668 5' -56.6 NC_005264.1 + 122094 0.66 0.871621
Target:  5'- cGCUGUCUCgccGCGaCUGgcgGCGGCCGa-- -3'
miRNA:   3'- -CGGCAGAGac-CGC-GAC---UGCUGGCaaa -5'
24668 5' -56.6 NC_005264.1 + 3067 0.66 0.871621
Target:  5'- cGCUGUCUCgccGCGaCUGgcgGCGGCCGa-- -3'
miRNA:   3'- -CGGCAGAGac-CGC-GAC---UGCUGGCaaa -5'
24668 5' -56.6 NC_005264.1 + 156160 0.67 0.856636
Target:  5'- gGCCGUCUC-GGCcucgcuGCUGGCGccaggaucucuGCCGg-- -3'
miRNA:   3'- -CGGCAGAGaCCG------CGACUGC-----------UGGCaaa -5'
24668 5' -56.6 NC_005264.1 + 26384 0.67 0.856636
Target:  5'- cGCCGUCUCUGaGCGCggccucaGCGcCCa--- -3'
miRNA:   3'- -CGGCAGAGAC-CGCGac-----UGCuGGcaaa -5'
24668 5' -56.6 NC_005264.1 + 37133 0.67 0.856636
Target:  5'- gGCCGUCUC-GGCcucgcuGCUGGCGccaggaucucuGCCGg-- -3'
miRNA:   3'- -CGGCAGAGaCCG------CGACUGC-----------UGGCaaa -5'
24668 5' -56.6 NC_005264.1 + 155576 0.67 0.840849
Target:  5'- cGCCGUCUucgucCUGGCGCcGACcuCCGc-- -3'
miRNA:   3'- -CGGCAGA-----GACCGCGaCUGcuGGCaaa -5'
24668 5' -56.6 NC_005264.1 + 36549 0.67 0.840849
Target:  5'- cGCCGUCUucgucCUGGCGCcGACcuCCGc-- -3'
miRNA:   3'- -CGGCAGA-----GACCGCGaCUGcuGGCaaa -5'
24668 5' -56.6 NC_005264.1 + 75697 0.68 0.815783
Target:  5'- cGCCGUCUUUcGGCGC-GAaGACUGg-- -3'
miRNA:   3'- -CGGCAGAGA-CCGCGaCUgCUGGCaaa -5'
24668 5' -56.6 NC_005264.1 + 79874 0.68 0.815783
Target:  5'- uUCGUCaCgggGGCGCggcGGCGACCGUc- -3'
miRNA:   3'- cGGCAGaGa--CCGCGa--CUGCUGGCAaa -5'
24668 5' -56.6 NC_005264.1 + 3660 0.68 0.807088
Target:  5'- cGCCGUCUCga-CGaugGGCGGCCGUc- -3'
miRNA:   3'- -CGGCAGAGaccGCga-CUGCUGGCAaa -5'
24668 5' -56.6 NC_005264.1 + 122687 0.68 0.807088
Target:  5'- cGCCGUCUCga-CGaugGGCGGCCGUc- -3'
miRNA:   3'- -CGGCAGAGaccGCga-CUGCUGGCAaa -5'
24668 5' -56.6 NC_005264.1 + 133132 0.68 0.789237
Target:  5'- aUCGUCUCUaaGCGCgggaGGCGACCGg-- -3'
miRNA:   3'- cGGCAGAGAc-CGCGa---CUGCUGGCaaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.