miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24669 3' -49.7 NC_005264.1 + 21314 0.66 0.998047
Target:  5'- -cGGACUUaUGGGuGcaGUUGUGGCGCCc -3'
miRNA:   3'- cuUUUGGA-ACCC-CuaUAGUACCGCGG- -5'
24669 3' -49.7 NC_005264.1 + 88223 0.66 0.997664
Target:  5'- uGAGcGCCagGGGGAacgugggGUCA-GGCGCg -3'
miRNA:   3'- -CUUuUGGaaCCCCUa------UAGUaCCGCGg -5'
24669 3' -49.7 NC_005264.1 + 50257 0.66 0.996711
Target:  5'- --uGGCCUcUGGGGAcgcCAUGGcCGCg -3'
miRNA:   3'- cuuUUGGA-ACCCCUauaGUACC-GCGg -5'
24669 3' -49.7 NC_005264.1 + 125629 0.67 0.996126
Target:  5'- gGAAAGCCggucGGGAgucCAUggagcGGCGCCg -3'
miRNA:   3'- -CUUUUGGaac-CCCUauaGUA-----CCGCGG- -5'
24669 3' -49.7 NC_005264.1 + 148404 0.67 0.995458
Target:  5'- ---uGCCUauUGGGGAgggCA-GGcCGCCa -3'
miRNA:   3'- cuuuUGGA--ACCCCUauaGUaCC-GCGG- -5'
24669 3' -49.7 NC_005264.1 + 116996 0.67 0.995458
Target:  5'- cGAAGUCUUGGGGGcgGUCugcgcGGCGCa -3'
miRNA:   3'- cUUUUGGAACCCCUa-UAGua---CCGCGg -5'
24669 3' -49.7 NC_005264.1 + 51673 0.67 0.994536
Target:  5'- cGAGAGCCggcagcucaGGAgggGUCGUGGUGCUc -3'
miRNA:   3'- -CUUUUGGaacc-----CCUa--UAGUACCGCGG- -5'
24669 3' -49.7 NC_005264.1 + 54709 0.68 0.99058
Target:  5'- cGAGGACaggGuGGGAag-CGUGGCGCUc -3'
miRNA:   3'- -CUUUUGgaaC-CCCUauaGUACCGCGG- -5'
24669 3' -49.7 NC_005264.1 + 126276 0.68 0.99058
Target:  5'- cGAGGA-CUUGGcGGAgGUC--GGCGCCa -3'
miRNA:   3'- -CUUUUgGAACC-CCUaUAGuaCCGCGG- -5'
24669 3' -49.7 NC_005264.1 + 7249 0.68 0.99058
Target:  5'- cGAGGA-CUUGGcGGAgGUC--GGCGCCa -3'
miRNA:   3'- -CUUUUgGAACC-CCUaUAGuaCCGCGG- -5'
24669 3' -49.7 NC_005264.1 + 16372 0.68 0.989233
Target:  5'- aAAGugCUgggggggaGGGGAUGccCGUGGCGCa -3'
miRNA:   3'- cUUUugGAa-------CCCCUAUa-GUACCGCGg -5'
24669 3' -49.7 NC_005264.1 + 69975 0.68 0.988356
Target:  5'- ---uACCUUGGcGGcUGcguccuugagcuucuUCAUGGCGUCg -3'
miRNA:   3'- cuuuUGGAACC-CCuAU---------------AGUACCGCGG- -5'
24669 3' -49.7 NC_005264.1 + 136333 0.69 0.977769
Target:  5'- aAAGACCgcGGGGAgagaUAUUAUacgGGCGCUg -3'
miRNA:   3'- cUUUUGGaaCCCCU----AUAGUA---CCGCGG- -5'
24669 3' -49.7 NC_005264.1 + 100074 0.7 0.972438
Target:  5'- cGGGGCCUaGGGcGUAgCAUGGCgGCCg -3'
miRNA:   3'- cUUUUGGAaCCCcUAUaGUACCG-CGG- -5'
24669 3' -49.7 NC_005264.1 + 36373 0.7 0.972438
Target:  5'- -uGGACCgcGGGGAgUAUCuccgcgcuaGGCGCCa -3'
miRNA:   3'- cuUUUGGaaCCCCU-AUAGua-------CCGCGG- -5'
24669 3' -49.7 NC_005264.1 + 46250 0.7 0.972438
Target:  5'- aGAAGACCgcgccUGGGGGcGUUuaggGGuCGCCg -3'
miRNA:   3'- -CUUUUGGa----ACCCCUaUAGua--CC-GCGG- -5'
24669 3' -49.7 NC_005264.1 + 52201 0.7 0.966242
Target:  5'- uGAGGGCCgUGGGGcgcg-GUGGCGCg -3'
miRNA:   3'- -CUUUUGGaACCCCuauagUACCGCGg -5'
24669 3' -49.7 NC_005264.1 + 138197 0.7 0.962801
Target:  5'- cAGAACCgUGGGGAUuaagCAU-GCGCUg -3'
miRNA:   3'- cUUUUGGaACCCCUAua--GUAcCGCGG- -5'
24669 3' -49.7 NC_005264.1 + 93560 0.7 0.962801
Target:  5'- cAGAGuCCacaGGGGcGUAaaaUCAUGGCGCCg -3'
miRNA:   3'- cUUUU-GGaa-CCCC-UAU---AGUACCGCGG- -5'
24669 3' -49.7 NC_005264.1 + 4675 0.71 0.946617
Target:  5'- gGAAuACCUgcgucGGGGcgA--GUGGCGCCg -3'
miRNA:   3'- -CUUuUGGAa----CCCCuaUagUACCGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.