miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24669 5' -49.6 NC_005264.1 + 34614 0.67 0.994601
Target:  5'- gUguACCGUUuguucaAgGCCcgCGGGGUGUUCg -3'
miRNA:   3'- -GguUGGUAG------UgCGGuaGUUCCACAAG- -5'
24669 5' -49.6 NC_005264.1 + 54785 0.72 0.926287
Target:  5'- uCCAgaacACCGggCAgGCCGUCAuagucgccGGGUGUUCc -3'
miRNA:   3'- -GGU----UGGUa-GUgCGGUAGU--------UCCACAAG- -5'
24669 5' -49.6 NC_005264.1 + 117408 0.72 0.931719
Target:  5'- -uGACUAUUACGCUAUCGGGGcUGUc- -3'
miRNA:   3'- ggUUGGUAGUGCGGUAGUUCC-ACAag -5'
24669 5' -49.6 NC_005264.1 + 123835 0.71 0.955036
Target:  5'- cCCugguCCAUC-CGUCGUCGcucugcAGGUGUUCc -3'
miRNA:   3'- -GGuu--GGUAGuGCGGUAGU------UCCACAAG- -5'
24669 5' -49.6 NC_005264.1 + 112032 0.71 0.958949
Target:  5'- -aAACCugcgcgCGCGCCGauccgacaaguUCAAGGUGUUUg -3'
miRNA:   3'- ggUUGGua----GUGCGGU-----------AGUUCCACAAG- -5'
24669 5' -49.6 NC_005264.1 + 74071 0.7 0.972255
Target:  5'- aCCGugCAUUcacgcacauacaGCGCCGUgCAGcuGGUGUUCu -3'
miRNA:   3'- -GGUugGUAG------------UGCGGUA-GUU--CCACAAG- -5'
24669 5' -49.6 NC_005264.1 + 144835 0.69 0.979954
Target:  5'- gCCGACCcgC-CGCCGUCAGagccGGUGc-- -3'
miRNA:   3'- -GGUUGGuaGuGCGGUAGUU----CCACaag -5'
24669 5' -49.6 NC_005264.1 + 156377 0.69 0.985937
Target:  5'- cCCGACguUCgccGCGCCGcCGAGGaGUUCu -3'
miRNA:   3'- -GGUUGguAG---UGCGGUaGUUCCaCAAG- -5'
24669 5' -49.6 NC_005264.1 + 60527 0.68 0.989092
Target:  5'- gUAACCuacgCAUGCCGgcCGAGGUGUcgUCg -3'
miRNA:   3'- gGUUGGua--GUGCGGUa-GUUCCACA--AG- -5'
24669 5' -49.6 NC_005264.1 + 105323 1.13 0.006901
Target:  5'- gCCAACCAUCACGCCAUCAAGGUGUUCa -3'
miRNA:   3'- -GGUUGGUAGUGCGGUAGUUCCACAAG- -5'
24669 5' -49.6 NC_005264.1 + 72846 0.68 0.991666
Target:  5'- aCGAgCGUCGCGCUcgAUCGgcauAGGUGUg- -3'
miRNA:   3'- gGUUgGUAGUGCGG--UAGU----UCCACAag -5'
24669 5' -49.6 NC_005264.1 + 111241 0.66 0.998587
Target:  5'- cCCGGCCAuacaaaccaucuuUCACGaCUuuggguUCAAGG-GUUCg -3'
miRNA:   3'- -GGUUGGU-------------AGUGC-GGu-----AGUUCCaCAAG- -5'
24669 5' -49.6 NC_005264.1 + 56234 0.67 0.996044
Target:  5'- gCGAgCGUCGCGCggcuuuUGUCGAGGUGg-- -3'
miRNA:   3'- gGUUgGUAGUGCG------GUAGUUCCACaag -5'
24669 5' -49.6 NC_005264.1 + 103923 0.67 0.996637
Target:  5'- aUAACC--UACGCCAUCGAGGa---- -3'
miRNA:   3'- gGUUGGuaGUGCGGUAGUUCCacaag -5'
24669 5' -49.6 NC_005264.1 + 52511 0.66 0.997957
Target:  5'- -aGGCUG-CACGCCGUCGAacaggcuGGUGUUa -3'
miRNA:   3'- ggUUGGUaGUGCGGUAGUU-------CCACAAg -5'
24669 5' -49.6 NC_005264.1 + 68830 0.66 0.997155
Target:  5'- gUCAGCCAUC-CGCCgAUCAGGuccuUGUacUCg -3'
miRNA:   3'- -GGUUGGUAGuGCGG-UAGUUCc---ACA--AG- -5'
24669 5' -49.6 NC_005264.1 + 52952 0.66 0.997155
Target:  5'- gCGGCgCAUUGCGCCG-CGGGGUaUUCc -3'
miRNA:   3'- gGUUG-GUAGUGCGGUaGUUCCAcAAG- -5'
24669 5' -49.6 NC_005264.1 + 157218 0.7 0.972255
Target:  5'- cCCAACCA------CGUCAAGGUGUUCg -3'
miRNA:   3'- -GGUUGGUagugcgGUAGUUCCACAAG- -5'
24669 5' -49.6 NC_005264.1 + 106454 0.7 0.969269
Target:  5'- gCGAUCGUCGCGCC-UCAGGGc---- -3'
miRNA:   3'- gGUUGGUAGUGCGGuAGUUCCacaag -5'
24669 5' -49.6 NC_005264.1 + 104538 0.68 0.990447
Target:  5'- gCAGCCGgcgaagCGCGCCAUCAgAGGa---- -3'
miRNA:   3'- gGUUGGUa-----GUGCGGUAGU-UCCacaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.