Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24670 | 5' | -44.9 | NC_005264.1 | + | 105507 | 1.12 | 0.028054 |
Target: 5'- gGCUAAACGCCUCUGUAUCUUUCGAUGc -3' miRNA: 3'- -CGAUUUGCGGAGACAUAGAAAGCUAC- -5' |
|||||||
24670 | 5' | -44.9 | NC_005264.1 | + | 20520 | 0.72 | 0.996763 |
Target: 5'- -gUAGACGUCUCUGUGUCcggCGGg- -3' miRNA: 3'- cgAUUUGCGGAGACAUAGaaaGCUac -5' |
|||||||
24670 | 5' | -44.9 | NC_005264.1 | + | 25194 | 0.71 | 0.999151 |
Target: 5'- uCUGAGgGCCgccCUGUGUCUgUCGAg- -3' miRNA: 3'- cGAUUUgCGGa--GACAUAGAaAGCUac -5' |
|||||||
24670 | 5' | -44.9 | NC_005264.1 | + | 116127 | 0.68 | 0.999971 |
Target: 5'- cGCU--GCGCCUCUGccgcaAUCccUUCGAUa -3' miRNA: 3'- -CGAuuUGCGGAGACa----UAGa-AAGCUAc -5' |
|||||||
24670 | 5' | -44.9 | NC_005264.1 | + | 140290 | 0.67 | 0.999995 |
Target: 5'- gGCUAcuCGCgguUUCUGUAUCUUUCc--- -3' miRNA: 3'- -CGAUuuGCG---GAGACAUAGAAAGcuac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home