miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 3' -57.8 NC_005264.1 + 120001 0.66 0.871297
Target:  5'- gCCC-CUGGgGCGgcAGGugggccuccccccucGCGGACCGGCg -3'
miRNA:   3'- aGGGcGGCCgCGU--UUC---------------UGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 24359 0.66 0.868394
Target:  5'- cCCCGCC-GCuCu--GGCAuGACCGGCu -3'
miRNA:   3'- aGGGCGGcCGcGuuuCUGU-CUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 125385 0.66 0.868394
Target:  5'- cUCCCGCUGGUGCucc-AUGGAUC-GCu -3'
miRNA:   3'- -AGGGCGGCCGCGuuucUGUCUGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 113366 0.66 0.868394
Target:  5'- gCCCGUcgaauaCGGCGCGggucAGGguuauGCAGGCgAGCu -3'
miRNA:   3'- aGGGCG------GCCGCGU----UUC-----UGUCUGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 104838 0.66 0.868394
Target:  5'- gUCCGCCGGgGCcgcuGAGcCAcGGCCGccGCg -3'
miRNA:   3'- aGGGCGGCCgCGu---UUCuGU-CUGGU--CG- -5'
24671 3' -57.8 NC_005264.1 + 45489 0.66 0.868394
Target:  5'- uUCCCGCCcguccuuuGGuUGCAAAGAagggacGACCcGCg -3'
miRNA:   3'- -AGGGCGG--------CC-GCGUUUCUgu----CUGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 57479 0.66 0.868394
Target:  5'- uUCCUGgCGGCggcgGCGAAGAU--GCUGGCg -3'
miRNA:   3'- -AGGGCgGCCG----CGUUUCUGucUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 81040 0.66 0.867663
Target:  5'- aCCCGCCgucuacccucacuGGCGCGugguuuaucGACGGcaACCGGUc -3'
miRNA:   3'- aGGGCGG-------------CCGCGUuu-------CUGUC--UGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 16992 0.66 0.860992
Target:  5'- cUCCGCCGGUcCAA--ACAGACuCAGg -3'
miRNA:   3'- aGGGCGGCCGcGUUucUGUCUG-GUCg -5'
24671 3' -57.8 NC_005264.1 + 16765 0.66 0.860992
Target:  5'- aCCCGCgcgggGGCGCGcuGuuCGGGCCGGa -3'
miRNA:   3'- aGGGCGg----CCGCGUuuCu-GUCUGGUCg -5'
24671 3' -57.8 NC_005264.1 + 28871 0.66 0.860992
Target:  5'- -aCCGCgCGGCgaacgccaccGCGAAGACcccGGCCAaGCu -3'
miRNA:   3'- agGGCG-GCCG----------CGUUUCUGu--CUGGU-CG- -5'
24671 3' -57.8 NC_005264.1 + 149436 0.66 0.860992
Target:  5'- gCgCGCCGGUGCGGAGA---GCUgcGGCg -3'
miRNA:   3'- aGgGCGGCCGCGUUUCUgucUGG--UCG- -5'
24671 3' -57.8 NC_005264.1 + 159027 0.66 0.860992
Target:  5'- cCCCGcCCGGgcccgaacuCGCGGAccgccacGCAGAUCGGCg -3'
miRNA:   3'- aGGGC-GGCC---------GCGUUUc------UGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 93477 0.66 0.860992
Target:  5'- aCCgCGCUgucugaGGCGCugcuGGCGG-CCGGCg -3'
miRNA:   3'- aGG-GCGG------CCGCGuuu-CUGUCuGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 18551 0.66 0.860992
Target:  5'- gCgCGCCGGCGUc-AGuCGGAgCGGCn -3'
miRNA:   3'- aGgGCGGCCGCGuuUCuGUCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 30409 0.66 0.860992
Target:  5'- gCgCGCCGGUGCGGAGA---GCUgcGGCg -3'
miRNA:   3'- aGgGCGGCCGCGUUUCUgucUGG--UCG- -5'
24671 3' -57.8 NC_005264.1 + 119281 0.66 0.860992
Target:  5'- aCUCGCCGGUugcucGCGGuGGCuGGgCAGCu -3'
miRNA:   3'- aGGGCGGCCG-----CGUUuCUGuCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 40000 0.66 0.860992
Target:  5'- cCCCGcCCGGgcccgaacuCGCGGAccgccacGCAGAUCGGCg -3'
miRNA:   3'- aGGGC-GGCC---------GCGUUUc------UGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 146072 0.66 0.860992
Target:  5'- -aCCGCCGGCGac--GAUcgGGACCucGCu -3'
miRNA:   3'- agGGCGGCCGCguuuCUG--UCUGGu-CG- -5'
24671 3' -57.8 NC_005264.1 + 40284 0.66 0.860241
Target:  5'- -gCCGCCGcGuCGCGguucgacGAGGCGGA-CGGCg -3'
miRNA:   3'- agGGCGGC-C-GCGU-------UUCUGUCUgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.