miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 3' -57.8 NC_005264.1 + 120001 0.66 0.871297
Target:  5'- gCCC-CUGGgGCGgcAGGugggccuccccccucGCGGACCGGCg -3'
miRNA:   3'- aGGGcGGCCgCGU--UUC---------------UGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 103137 0.66 0.853391
Target:  5'- -gCCGCCGGCGCGGc-GCGcGGCgcaaAGCg -3'
miRNA:   3'- agGGCGGCCGCGUUucUGU-CUGg---UCG- -5'
24671 3' -57.8 NC_005264.1 + 31289 0.66 0.853391
Target:  5'- cUCCUaCCGGCuagaugcaGCGAGGAC-GACCucuAGCg -3'
miRNA:   3'- -AGGGcGGCCG--------CGUUUCUGuCUGG---UCG- -5'
24671 3' -57.8 NC_005264.1 + 96630 0.66 0.853391
Target:  5'- gUCCuuCGCUGGcCGCGGAGGCGcACC-GCc -3'
miRNA:   3'- -AGG--GCGGCC-GCGUUUCUGUcUGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 84178 0.66 0.853391
Target:  5'- --aCGCCGGCaCAuAGugGGACgaGGCa -3'
miRNA:   3'- aggGCGGCCGcGUuUCugUCUGg-UCG- -5'
24671 3' -57.8 NC_005264.1 + 33595 0.66 0.845596
Target:  5'- aCCCG-CGGCGCGuuuGGACccuACCuGCu -3'
miRNA:   3'- aGGGCgGCCGCGUu--UCUGuc-UGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 158855 0.66 0.845596
Target:  5'- aCCCGCCGcCGcCGAaugcggcuaacAGcauacccgaACAGGCCGGCa -3'
miRNA:   3'- aGGGCGGCcGC-GUU-----------UC---------UGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 29451 0.66 0.845596
Target:  5'- gUCCUcgGUCGGCcccacGCGgauuggGGGGCGGugCAGCg -3'
miRNA:   3'- -AGGG--CGGCCG-----CGU------UUCUGUCugGUCG- -5'
24671 3' -57.8 NC_005264.1 + 4737 0.66 0.845596
Target:  5'- gCCCgccgaGCCGGCGUccGGGGGUGGACCGccGCg -3'
miRNA:   3'- aGGG-----CGGCCGCG--UUUCUGUCUGGU--CG- -5'
24671 3' -57.8 NC_005264.1 + 109856 0.66 0.853391
Target:  5'- gCCCG-CGaGCGCGAgcuaguGGACAGAgCGGa -3'
miRNA:   3'- aGGGCgGC-CGCGUU------UCUGUCUgGUCg -5'
24671 3' -57.8 NC_005264.1 + 145048 0.66 0.853391
Target:  5'- -aCCGCCagguaccuuGGCGCucuaGAAGcCGGGCCGGg -3'
miRNA:   3'- agGGCGG---------CCGCG----UUUCuGUCUGGUCg -5'
24671 3' -57.8 NC_005264.1 + 975 0.66 0.856455
Target:  5'- gCCC-CUGGgGCGGcAGgugggccucccccucGCGGACCGGCg -3'
miRNA:   3'- aGGGcGGCCgCGUU-UC---------------UGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 125385 0.66 0.868394
Target:  5'- cUCCCGCUGGUGCucc-AUGGAUC-GCu -3'
miRNA:   3'- -AGGGCGGCCGCGuuucUGUCUGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 113366 0.66 0.868394
Target:  5'- gCCCGUcgaauaCGGCGCGggucAGGguuauGCAGGCgAGCu -3'
miRNA:   3'- aGGGCG------GCCGCGU----UUC-----UGUCUGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 104838 0.66 0.868394
Target:  5'- gUCCGCCGGgGCcgcuGAGcCAcGGCCGccGCg -3'
miRNA:   3'- aGGGCGGCCgCGu---UUCuGU-CUGGU--CG- -5'
24671 3' -57.8 NC_005264.1 + 45489 0.66 0.868394
Target:  5'- uUCCCGCCcguccuuuGGuUGCAAAGAagggacGACCcGCg -3'
miRNA:   3'- -AGGGCGG--------CC-GCGUUUCUgu----CUGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 40000 0.66 0.860992
Target:  5'- cCCCGcCCGGgcccgaacuCGCGGAccgccacGCAGAUCGGCg -3'
miRNA:   3'- aGGGC-GGCC---------GCGUUUc------UGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 119281 0.66 0.860992
Target:  5'- aCUCGCCGGUugcucGCGGuGGCuGGgCAGCu -3'
miRNA:   3'- aGGGCGGCCG-----CGUUuCUGuCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 30409 0.66 0.860992
Target:  5'- gCgCGCCGGUGCGGAGA---GCUgcGGCg -3'
miRNA:   3'- aGgGCGGCCGCGUUUCUgucUGG--UCG- -5'
24671 3' -57.8 NC_005264.1 + 40284 0.66 0.860241
Target:  5'- -gCCGCCGcGuCGCGguucgacGAGGCGGA-CGGCg -3'
miRNA:   3'- agGGCGGC-C-GCGU-------UUCUGUCUgGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.