miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 3' -57.8 NC_005264.1 + 105688 1.11 0.001653
Target:  5'- cUCCCGCCGGCGCAAAGACAGACCAGCc -3'
miRNA:   3'- -AGGGCGGCCGCGUUUCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 78496 0.79 0.218729
Target:  5'- aCgCGCCGGUGCAcgcGGugAGGCCAGUa -3'
miRNA:   3'- aGgGCGGCCGCGUu--UCugUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 102754 0.78 0.240709
Target:  5'- -gCCGCCGGCaguagGCuAGGGGCGGGCCAGUu -3'
miRNA:   3'- agGGCGGCCG-----CG-UUUCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 152121 0.77 0.296881
Target:  5'- gUCCgCGCCGGgggacaaGUAGAGGUAGGCCAGCa -3'
miRNA:   3'- -AGG-GCGGCCg------CGUUUCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 154613 0.76 0.310669
Target:  5'- aCCgCGCUGGCGUAcu--CGGACCAGCg -3'
miRNA:   3'- aGG-GCGGCCGCGUuucuGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 120291 0.75 0.347246
Target:  5'- -gCUGCCGGCGCGAAGACGcGCggaAGCu -3'
miRNA:   3'- agGGCGGCCGCGUUUCUGUcUGg--UCG- -5'
24671 3' -57.8 NC_005264.1 + 111723 0.75 0.362715
Target:  5'- gCCCGCCagcgucgaGGCGCGA--GCAGACCgcAGCa -3'
miRNA:   3'- aGGGCGG--------CCGCGUUucUGUCUGG--UCG- -5'
24671 3' -57.8 NC_005264.1 + 64340 0.75 0.386801
Target:  5'- cCCCGUCGGCGCcuccGGCAGAUacuuUAGCa -3'
miRNA:   3'- aGGGCGGCCGCGuuu-CUGUCUG----GUCG- -5'
24671 3' -57.8 NC_005264.1 + 94597 0.74 0.420512
Target:  5'- gCCCG-CGGCGCGGGcauggcuuGGCGGugCGGCg -3'
miRNA:   3'- aGGGCgGCCGCGUUU--------CUGUCugGUCG- -5'
24671 3' -57.8 NC_005264.1 + 98320 0.74 0.420512
Target:  5'- cUCCgCGgCGGCGC--GGACAGAaCAGCg -3'
miRNA:   3'- -AGG-GCgGCCGCGuuUCUGUCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 79444 0.74 0.429213
Target:  5'- aCCCG-CGGCGCGcAGAC-GACgAGCg -3'
miRNA:   3'- aGGGCgGCCGCGUuUCUGuCUGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 162701 0.73 0.455937
Target:  5'- gCgCGCCGGCGUuAAGGCGGccGCCGGg -3'
miRNA:   3'- aGgGCGGCCGCGuUUCUGUC--UGGUCg -5'
24671 3' -57.8 NC_005264.1 + 43675 0.73 0.455937
Target:  5'- gCgCGCCGGCGUuAAGGCGGccGCCGGg -3'
miRNA:   3'- aGgGCGGCCGCGuUUCUGUC--UGGUCg -5'
24671 3' -57.8 NC_005264.1 + 161843 0.73 0.459568
Target:  5'- uUCCCGCCGGUccGCGAGGGgGGAggcccaccugccgccCCAGg -3'
miRNA:   3'- -AGGGCGGCCG--CGUUUCUgUCU---------------GGUCg -5'
24671 3' -57.8 NC_005264.1 + 42817 0.73 0.459568
Target:  5'- uUCCCGCCGGUccGCGAGGGgGGAggcccaccugccgccCCAGg -3'
miRNA:   3'- -AGGGCGGCCG--CGUUUCUgUCU---------------GGUCg -5'
24671 3' -57.8 NC_005264.1 + 36742 0.73 0.465043
Target:  5'- cCCCGCa-GCGCGAcGGCGccGGCCGGCg -3'
miRNA:   3'- aGGGCGgcCGCGUUuCUGU--CUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 64684 0.73 0.465043
Target:  5'- gCCUGCCGGCG----GGCAGGCCGuGCu -3'
miRNA:   3'- aGGGCGGCCGCguuuCUGUCUGGU-CG- -5'
24671 3' -57.8 NC_005264.1 + 155768 0.73 0.465043
Target:  5'- cCCCGCa-GCGCGAcGGCGccGGCCGGCg -3'
miRNA:   3'- aGGGCGgcCGCGUUuCUGU--CUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 144839 0.73 0.474243
Target:  5'- aCCCGCCGcCGuCAGAGcCGGuGCCGGCu -3'
miRNA:   3'- aGGGCGGCcGC-GUUUCuGUC-UGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 159739 0.73 0.492909
Target:  5'- aCCUGCUGcGCGCGAuGGCAGACgaAGUg -3'
miRNA:   3'- aGGGCGGC-CGCGUUuCUGUCUGg-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.