miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 3' -57.8 NC_005264.1 + 159739 0.73 0.492909
Target:  5'- aCCUGCUGcGCGCGAuGGCAGACgaAGUg -3'
miRNA:   3'- aGGGCGGC-CGCGUUuCUGUCUGg-UCG- -5'
24671 3' -57.8 NC_005264.1 + 34379 0.73 0.492909
Target:  5'- aCuuGCCGaCGcCAAAGACGGGCgCGGCu -3'
miRNA:   3'- aGggCGGCcGC-GUUUCUGUCUG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 70318 0.73 0.492909
Target:  5'- cCCCGCCGGCGCGcuGACcgAGuCCGu- -3'
miRNA:   3'- aGGGCGGCCGCGUuuCUG--UCuGGUcg -5'
24671 3' -57.8 NC_005264.1 + 120196 0.73 0.492909
Target:  5'- gUCUGCCGGCGCGcgauGGGgguacgcaGCGGACCGGg -3'
miRNA:   3'- aGGGCGGCCGCGU----UUC--------UGUCUGGUCg -5'
24671 3' -57.8 NC_005264.1 + 132446 0.72 0.501419
Target:  5'- gCUCGCCGGCGuCAAGGccuuucuggaaguGCAGAauuaCGGCa -3'
miRNA:   3'- aGGGCGGCCGC-GUUUC-------------UGUCUg---GUCG- -5'
24671 3' -57.8 NC_005264.1 + 116654 0.72 0.502368
Target:  5'- gUCCGCCGGCGUGcucGGC-GAUCAGCc -3'
miRNA:   3'- aGGGCGGCCGCGUuu-CUGuCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 135676 0.72 0.502368
Target:  5'- -gCCGCCgugaagacGGCcuGCAcGGACGGGCCGGCc -3'
miRNA:   3'- agGGCGG--------CCG--CGUuUCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 18576 0.72 0.511905
Target:  5'- aUCCGCCGGC-CcAAGGCAGcgaGCCAGg -3'
miRNA:   3'- aGGGCGGCCGcGuUUCUGUC---UGGUCg -5'
24671 3' -57.8 NC_005264.1 + 42358 0.72 0.521517
Target:  5'- cCCCGCCGGCGau-GGcCGGugCuGGCu -3'
miRNA:   3'- aGGGCGGCCGCguuUCuGUCugG-UCG- -5'
24671 3' -57.8 NC_005264.1 + 161385 0.72 0.521517
Target:  5'- cCCCGCCGGCGau-GGcCGGugCuGGCu -3'
miRNA:   3'- aGGGCGGCCGCguuUCuGUCugG-UCG- -5'
24671 3' -57.8 NC_005264.1 + 161662 0.72 0.521517
Target:  5'- gUCCGCUGcguaccccaucGCGCGccGGCAGACUGGCg -3'
miRNA:   3'- aGGGCGGC-----------CGCGUuuCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 42635 0.72 0.531198
Target:  5'- gUCCGCUGcguacccccaucGCGCGccGGCAGACUGGCg -3'
miRNA:   3'- aGGGCGGC------------CGCGUuuCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 109891 0.72 0.531198
Target:  5'- cCCCG-CGGCGCAAugcgccgcGGGCGcGGCCAuGCa -3'
miRNA:   3'- aGGGCgGCCGCGUU--------UCUGU-CUGGU-CG- -5'
24671 3' -57.8 NC_005264.1 + 621 0.72 0.540943
Target:  5'- cCCCGCCGGCccGCGucG-CAGG-CAGCg -3'
miRNA:   3'- aGGGCGGCCG--CGUuuCuGUCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 119648 0.72 0.540943
Target:  5'- cCCCGCCGGCccGCGucG-CAGG-CAGCg -3'
miRNA:   3'- aGGGCGGCCG--CGUuuCuGUCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 77119 0.71 0.550748
Target:  5'- aUCaaaCGCgCGGCGC--AGACGGAUgAGCg -3'
miRNA:   3'- -AGg--GCG-GCCGCGuuUCUGUCUGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 95397 0.71 0.560606
Target:  5'- gCCgCGCUGGUGCAGGGGCuucAGAUaGGCg -3'
miRNA:   3'- aGG-GCGGCCGCGUUUCUG---UCUGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 92158 0.71 0.560606
Target:  5'- gCCCGCgGGCGUAAAaauuGCcuGCCGGCg -3'
miRNA:   3'- aGGGCGgCCGCGUUUc---UGucUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 130523 0.71 0.560606
Target:  5'- --aCGCCGGCG---AGAUAGACCuGCg -3'
miRNA:   3'- aggGCGGCCGCguuUCUGUCUGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 145972 0.71 0.560606
Target:  5'- cUUCGCCGGCGCGAAuacgaacugcgcGGCGG-CUGGCg -3'
miRNA:   3'- aGGGCGGCCGCGUUU------------CUGUCuGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.