Results 21 - 40 of 257 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24671 | 3' | -57.8 | NC_005264.1 | + | 40284 | 0.66 | 0.860241 |
Target: 5'- -gCCGCCGcGuCGCGguucgacGAGGCGGA-CGGCg -3' miRNA: 3'- agGGCGGC-C-GCGU-------UUCUGUCUgGUCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 975 | 0.66 | 0.856455 |
Target: 5'- gCCC-CUGGgGCGGcAGgugggccucccccucGCGGACCGGCg -3' miRNA: 3'- aGGGcGGCCgCGUU-UC---------------UGUCUGGUCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 138459 | 0.66 | 0.853391 |
Target: 5'- cUCgCCGCCGGgggagcCGCGAAGcCGGucauGCCAGa -3' miRNA: 3'- -AG-GGCGGCC------GCGUUUCuGUC----UGGUCg -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 36433 | 0.66 | 0.853391 |
Target: 5'- aCCUGCaGGcCGCGGAGAC-GACUuGCc -3' miRNA: 3'- aGGGCGgCC-GCGUUUCUGuCUGGuCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 145155 | 0.66 | 0.853391 |
Target: 5'- cUCCGCCaGCgGCu--GACGaGCCGGCg -3' miRNA: 3'- aGGGCGGcCG-CGuuuCUGUcUGGUCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 150316 | 0.66 | 0.853391 |
Target: 5'- cUCCUaCCGGCuagaugcaGCGAGGAC-GACCucuAGCg -3' miRNA: 3'- -AGGGcGGCCG--------CGUUUCUGuCUGG---UCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 145048 | 0.66 | 0.853391 |
Target: 5'- -aCCGCCagguaccuuGGCGCucuaGAAGcCGGGCCGGg -3' miRNA: 3'- agGGCGG---------CCGCG----UUUCuGUCUGGUCg -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 84178 | 0.66 | 0.853391 |
Target: 5'- --aCGCCGGCaCAuAGugGGACgaGGCa -3' miRNA: 3'- aggGCGGCCGcGUuUCugUCUGg-UCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 109856 | 0.66 | 0.853391 |
Target: 5'- gCCCG-CGaGCGCGAgcuaguGGACAGAgCGGa -3' miRNA: 3'- aGGGCgGC-CGCGUU------UCUGUCUgGUCg -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 103137 | 0.66 | 0.853391 |
Target: 5'- -gCCGCCGGCGCGGc-GCGcGGCgcaaAGCg -3' miRNA: 3'- agGGCGGCCGCGUUucUGU-CUGg---UCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 31289 | 0.66 | 0.853391 |
Target: 5'- cUCCUaCCGGCuagaugcaGCGAGGAC-GACCucuAGCg -3' miRNA: 3'- -AGGGcGGCCG--------CGUUUCUGuCUGG---UCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 96630 | 0.66 | 0.853391 |
Target: 5'- gUCCuuCGCUGGcCGCGGAGGCGcACC-GCc -3' miRNA: 3'- -AGG--GCGGCC-GCGUUUCUGUcUGGuCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 123763 | 0.66 | 0.845596 |
Target: 5'- gCCCgccgaGCCGGCGUccGGGGGUGGACCGccGCg -3' miRNA: 3'- aGGG-----CGGCCGCG--UUUCUGUCUGGU--CG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 33595 | 0.66 | 0.845596 |
Target: 5'- aCCCG-CGGCGCGuuuGGACccuACCuGCu -3' miRNA: 3'- aGGGCgGCCGCGUu--UCUGuc-UGGuCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 158855 | 0.66 | 0.845596 |
Target: 5'- aCCCGCCGcCGcCGAaugcggcuaacAGcauacccgaACAGGCCGGCa -3' miRNA: 3'- aGGGCGGCcGC-GUU-----------UC---------UGUCUGGUCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 152622 | 0.66 | 0.845596 |
Target: 5'- aCCCG-CGGCGCGuuuGGACccuACCuGCu -3' miRNA: 3'- aGGGCgGCCGCGUu--UCUGuc-UGGuCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 29451 | 0.66 | 0.845596 |
Target: 5'- gUCCUcgGUCGGCcccacGCGgauuggGGGGCGGugCAGCg -3' miRNA: 3'- -AGGG--CGGCCG-----CGU------UUCUGUCugGUCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 4737 | 0.66 | 0.845596 |
Target: 5'- gCCCgccgaGCCGGCGUccGGGGGUGGACCGccGCg -3' miRNA: 3'- aGGG-----CGGCCGCG--UUUCUGUCUGGU--CG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 45227 | 0.66 | 0.845596 |
Target: 5'- --aCGCCGaGCGCAGcguAGGCAuGGCC-GCu -3' miRNA: 3'- aggGCGGC-CGCGUU---UCUGU-CUGGuCG- -5' |
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24671 | 3' | -57.8 | NC_005264.1 | + | 162601 | 0.66 | 0.844806 |
Target: 5'- gCCCGCCucgcuguGGCGCcAGGcACGGAa-AGCg -3' miRNA: 3'- aGGGCGG-------CCGCGuUUC-UGUCUggUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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