miRNA display CGI


Results 41 - 60 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 3' -57.8 NC_005264.1 + 43574 0.66 0.844806
Target:  5'- gCCCGCCucgcuguGGCGCcAGGcACGGAa-AGCg -3'
miRNA:   3'- aGGGCGG-------CCGCGuUUC-UGUCUggUCG- -5'
24671 3' -57.8 NC_005264.1 + 82924 0.66 0.843221
Target:  5'- gUCCGCCGcagacgucggccacGCGCAcgcaAAGAcCAGGCCugAGCc -3'
miRNA:   3'- aGGGCGGC--------------CGCGU----UUCU-GUCUGG--UCG- -5'
24671 3' -57.8 NC_005264.1 + 136786 0.66 0.837614
Target:  5'- gUCCUuUCGGCGCGuggccGGGCGGACaaAGCu -3'
miRNA:   3'- -AGGGcGGCCGCGUu----UCUGUCUGg-UCG- -5'
24671 3' -57.8 NC_005264.1 + 71429 0.66 0.837614
Target:  5'- cUCCGCCGGUGCcccGGCgcuaGGGCCAa- -3'
miRNA:   3'- aGGGCGGCCGCGuuuCUG----UCUGGUcg -5'
24671 3' -57.8 NC_005264.1 + 121890 0.66 0.837614
Target:  5'- gCCCGCugCGGCuGCGAucGACcgGGGCgCGGCg -3'
miRNA:   3'- aGGGCG--GCCG-CGUUu-CUG--UCUG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 8781 0.66 0.837614
Target:  5'- -aCgGCgGGCGUcggccAGGACGG-CCAGCg -3'
miRNA:   3'- agGgCGgCCGCGu----UUCUGUCuGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 16172 0.66 0.837614
Target:  5'- -gCCGCCcuGCGCGGAGGuCGGuCgCGGCa -3'
miRNA:   3'- agGGCGGc-CGCGUUUCU-GUCuG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 18140 0.66 0.837614
Target:  5'- -gCUGuCUGGCGCGagcggcuaaGAGACAGGCUugucGGCu -3'
miRNA:   3'- agGGC-GGCCGCGU---------UUCUGUCUGG----UCG- -5'
24671 3' -57.8 NC_005264.1 + 149407 0.66 0.837614
Target:  5'- cUCCGCUcGCGCGuAGACuGGGCCuuuGGCu -3'
miRNA:   3'- aGGGCGGcCGCGUuUCUG-UCUGG---UCG- -5'
24671 3' -57.8 NC_005264.1 + 127807 0.66 0.837614
Target:  5'- -aCgGCgGGCGUcggccAGGACGG-CCAGCg -3'
miRNA:   3'- agGgCGgCCGCGu----UUCUGUCuGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 2864 0.66 0.837614
Target:  5'- gCCCGCugCGGCuGCGAucGACcgGGGCgCGGCg -3'
miRNA:   3'- aGGGCG--GCCG-CGUUu-CUG--UCUG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 109521 0.66 0.832737
Target:  5'- cCCUGCUGGCcaaGCAGccccuGGGCAGACUucccguugcccccgaAGCc -3'
miRNA:   3'- aGGGCGGCCG---CGUU-----UCUGUCUGG---------------UCG- -5'
24671 3' -57.8 NC_005264.1 + 126160 0.66 0.832737
Target:  5'- aUCCGCCauugcgccagaguauGGCGCAGccGCAGGuuGGCu -3'
miRNA:   3'- aGGGCGG---------------CCGCGUUucUGUCUggUCG- -5'
24671 3' -57.8 NC_005264.1 + 155261 0.66 0.829451
Target:  5'- cUCCGCagCGGCGCGGGG-UAGG-CGGCg -3'
miRNA:   3'- aGGGCG--GCCGCGUUUCuGUCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 30609 0.66 0.829451
Target:  5'- gCCCGgcgaCGGCgGCGgcGACGGAUCcGCg -3'
miRNA:   3'- aGGGCg---GCCG-CGUuuCUGUCUGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 105665 0.66 0.829451
Target:  5'- cUuuGCCGGCG-----GCAGACCAuGCg -3'
miRNA:   3'- aGggCGGCCGCguuucUGUCUGGU-CG- -5'
24671 3' -57.8 NC_005264.1 + 120101 0.66 0.829451
Target:  5'- gCCCaCCGggugccGCGCAGaAGugGGGCgCAGCg -3'
miRNA:   3'- aGGGcGGC------CGCGUU-UCugUCUG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 149636 0.66 0.829451
Target:  5'- gCCCGgcgaCGGCgGCGgcGACGGAUCcGCg -3'
miRNA:   3'- aGGGCg---GCCG-CGUuuCUGUCUGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 128979 0.66 0.829451
Target:  5'- --aCGCCGGCG-AGGGACugccGGACCcguGCg -3'
miRNA:   3'- aggGCGGCCGCgUUUCUG----UCUGGu--CG- -5'
24671 3' -57.8 NC_005264.1 + 102614 0.66 0.829451
Target:  5'- cUCUCG-CGGCGCuuucaacGAGACGguuuGACCGGUu -3'
miRNA:   3'- -AGGGCgGCCGCGu------UUCUGU----CUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.