miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 3' -57.8 NC_005264.1 + 234 0.69 0.670781
Target:  5'- uUCCgUGCCuGGCGCcacagcGAGGCGGGCC-GCu -3'
miRNA:   3'- -AGG-GCGG-CCGCGu-----UUCUGUCUGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 621 0.72 0.540943
Target:  5'- cCCCGCCGGCccGCGucG-CAGG-CAGCg -3'
miRNA:   3'- aGGGCGGCCG--CGUuuCuGUCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 975 0.66 0.856455
Target:  5'- gCCC-CUGGgGCGGcAGgugggccucccccucGCGGACCGGCg -3'
miRNA:   3'- aGGGcGGCCgCGUU-UC---------------UGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 1169 0.73 0.492909
Target:  5'- gUCUGCCGGCGCGcgauGGGgguacgcaGCGGACCGGg -3'
miRNA:   3'- aGGGCGGCCGCGU----UUC--------UGUCUGGUCg -5'
24671 3' -57.8 NC_005264.1 + 1239 0.67 0.821115
Target:  5'- aUCCCGCaCGGUGaaucuGAUuucGGCCGGUa -3'
miRNA:   3'- -AGGGCG-GCCGCguuu-CUGu--CUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 1550 0.7 0.660762
Target:  5'- aCCgCGCCGGCaau-AGGCGGGCCccGGCc -3'
miRNA:   3'- aGG-GCGGCCGcguuUCUGUCUGG--UCG- -5'
24671 3' -57.8 NC_005264.1 + 2763 0.67 0.803952
Target:  5'- gUCCC-CCGGCGCcguaccgucuGGGGAguGGUCGGCc -3'
miRNA:   3'- -AGGGcGGCCGCG----------UUUCUguCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 2864 0.66 0.837614
Target:  5'- gCCCGCugCGGCuGCGAucGACcgGGGCgCGGCg -3'
miRNA:   3'- aGGGCG--GCCG-CGUUu-CUG--UCUG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 3001 0.68 0.758558
Target:  5'- aCCgGCCGGCGCuaau-CAu-CCAGCg -3'
miRNA:   3'- aGGgCGGCCGCGuuucuGUcuGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 4737 0.66 0.845596
Target:  5'- gCCCgccgaGCCGGCGUccGGGGGUGGACCGccGCg -3'
miRNA:   3'- aGGG-----CGGCCGCG--UUUCUGUCUGGU--CG- -5'
24671 3' -57.8 NC_005264.1 + 4839 0.68 0.758558
Target:  5'- gUUCCGCCaGGCgGCAcAGAgUAGGCuCGGCc -3'
miRNA:   3'- -AGGGCGG-CCG-CGUuUCU-GUCUG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 8231 0.67 0.803952
Target:  5'- gUCCgaguaCGCCaGCGCGGuuAGuCuGGCCAGCg -3'
miRNA:   3'- -AGG-----GCGGcCGCGUU--UCuGuCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 8295 0.67 0.795141
Target:  5'- gCCCGUgGGCGaCGGGGGC--ACCuGCg -3'
miRNA:   3'- aGGGCGgCCGC-GUUUCUGucUGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 8471 0.69 0.697654
Target:  5'- aUCCGCCaGCuggguccccaagcaGCAGAGugGG-CCGGCg -3'
miRNA:   3'- aGGGCGGcCG--------------CGUUUCugUCuGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 8781 0.66 0.837614
Target:  5'- -aCgGCgGGCGUcggccAGGACGG-CCAGCg -3'
miRNA:   3'- agGgCGgCCGCGu----UUCUGUCuGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 9953 0.67 0.821115
Target:  5'- --aCGCCGGCG-AGGGACugccGGACCcgugGGCg -3'
miRNA:   3'- aggGCGGCCGCgUUUCUG----UCUGG----UCG- -5'
24671 3' -57.8 NC_005264.1 + 10728 0.68 0.758558
Target:  5'- gUCCC-CCGGCGCGGAcACcGA-CGGCa -3'
miRNA:   3'- -AGGGcGGCCGCGUUUcUGuCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 11979 0.67 0.821115
Target:  5'- gUCuuGCCGcGCGCGGcacGGCAGAgUAcGCg -3'
miRNA:   3'- -AGggCGGC-CGCGUUu--CUGUCUgGU-CG- -5'
24671 3' -57.8 NC_005264.1 + 13110 0.71 0.560606
Target:  5'- gCCCGCCGGCGCcAcuACAG-CaAGCg -3'
miRNA:   3'- aGGGCGGCCGCGuUucUGUCuGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 13430 0.71 0.590444
Target:  5'- -aCCGCCGcCGCcGAGACGcGACgCGGCg -3'
miRNA:   3'- agGGCGGCcGCGuUUCUGU-CUG-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.