miRNA display CGI


Results 21 - 40 of 257 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 3' -57.8 NC_005264.1 + 14072 0.7 0.660762
Target:  5'- cUCCaUGCCGaGCauCAGAGACAGGCguGCc -3'
miRNA:   3'- -AGG-GCGGC-CGc-GUUUCUGUCUGguCG- -5'
24671 3' -57.8 NC_005264.1 + 15590 0.7 0.660762
Target:  5'- gCuuGCgGGCGCAGcuGCGGcuCCGGCa -3'
miRNA:   3'- aGggCGgCCGCGUUucUGUCu-GGUCG- -5'
24671 3' -57.8 NC_005264.1 + 16172 0.66 0.837614
Target:  5'- -gCCGCCcuGCGCGGAGGuCGGuCgCGGCa -3'
miRNA:   3'- agGGCGGc-CGCGUUUCU-GUCuG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 16450 0.68 0.758558
Target:  5'- gCCCGCgGGUGUGAAcGugGucgaACCAGCg -3'
miRNA:   3'- aGGGCGgCCGCGUUU-CugUc---UGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 16510 0.69 0.680768
Target:  5'- --aCGCCGGCGCAGacGGAUGGuACaAGCa -3'
miRNA:   3'- aggGCGGCCGCGUU--UCUGUC-UGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 16765 0.66 0.860992
Target:  5'- aCCCGCgcgggGGCGCGcuGuuCGGGCCGGa -3'
miRNA:   3'- aGGGCGg----CCGCGUuuCu-GUCUGGUCg -5'
24671 3' -57.8 NC_005264.1 + 16908 0.71 0.600458
Target:  5'- uUCCCGUCGGcCGCGGAcGAUGGcGgCGGCg -3'
miRNA:   3'- -AGGGCGGCC-GCGUUU-CUGUC-UgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 16992 0.66 0.860992
Target:  5'- cUCCGCCGGUcCAA--ACAGACuCAGg -3'
miRNA:   3'- aGGGCGGCCGcGUUucUGUCUG-GUCg -5'
24671 3' -57.8 NC_005264.1 + 17186 0.67 0.79247
Target:  5'- gUUCCGCCGGCgggcagcguucuucGUAAAGAUGGcCCgaaaAGCa -3'
miRNA:   3'- -AGGGCGGCCG--------------CGUUUCUGUCuGG----UCG- -5'
24671 3' -57.8 NC_005264.1 + 18140 0.66 0.837614
Target:  5'- -gCUGuCUGGCGCGagcggcuaaGAGACAGGCUugucGGCu -3'
miRNA:   3'- agGGC-GGCCGCGU---------UUCUGUCUGG----UCG- -5'
24671 3' -57.8 NC_005264.1 + 18433 0.71 0.600458
Target:  5'- cUCUCGCuCGGCGCGGGGucgaaGGACguGUa -3'
miRNA:   3'- -AGGGCG-GCCGCGUUUCug---UCUGguCG- -5'
24671 3' -57.8 NC_005264.1 + 18551 0.66 0.860992
Target:  5'- gCgCGCCGGCGUc-AGuCGGAgCGGCn -3'
miRNA:   3'- aGgGCGGCCGCGuuUCuGUCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 18576 0.72 0.511905
Target:  5'- aUCCGCCGGC-CcAAGGCAGcgaGCCAGg -3'
miRNA:   3'- aGGGCGGCCGcGuUUCUGUC---UGGUCg -5'
24671 3' -57.8 NC_005264.1 + 19106 0.67 0.820272
Target:  5'- aCCgCGgCGGCGCGGAGACgagcacuacgaugGGGCUAcGUg -3'
miRNA:   3'- aGG-GCgGCCGCGUUUCUG-------------UCUGGU-CG- -5'
24671 3' -57.8 NC_005264.1 + 19205 0.67 0.821115
Target:  5'- gCuuGCCcaugguGUGCAGGGAgcaGGGCCGGCa -3'
miRNA:   3'- aGggCGGc-----CGCGUUUCUg--UCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 21939 0.67 0.812613
Target:  5'- gCUgGUCGGCGaCucGGGCgcaaaAGGCCAGCu -3'
miRNA:   3'- aGGgCGGCCGC-GuuUCUG-----UCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 21986 0.67 0.821115
Target:  5'- gUCgGCCuGGCGCAAGcGAaAGGCgCGGCg -3'
miRNA:   3'- aGGgCGG-CCGCGUUU-CUgUCUG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 23623 0.67 0.820272
Target:  5'- gCUCGCUGGCGauuggcuuagagcCAuAGuACAgGACCGGCa -3'
miRNA:   3'- aGGGCGGCCGC-------------GUuUC-UGU-CUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 24359 0.66 0.868394
Target:  5'- cCCCGCC-GCuCu--GGCAuGACCGGCu -3'
miRNA:   3'- aGGGCGGcCGcGuuuCUGU-CUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 24390 0.68 0.758558
Target:  5'- cUCCC-CCGGCgGCGAGG-UAGAUCgcgAGCa -3'
miRNA:   3'- -AGGGcGGCCG-CGUUUCuGUCUGG---UCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.