miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 3' -57.8 NC_005264.1 + 162701 0.73 0.455937
Target:  5'- gCgCGCCGGCGUuAAGGCGGccGCCGGg -3'
miRNA:   3'- aGgGCGGCCGCGuUUCUGUC--UGGUCg -5'
24671 3' -57.8 NC_005264.1 + 162601 0.66 0.844806
Target:  5'- gCCCGCCucgcuguGGCGCcAGGcACGGAa-AGCg -3'
miRNA:   3'- aGGGCGG-------CCGCGuUUC-UGUCUggUCG- -5'
24671 3' -57.8 NC_005264.1 + 162458 0.68 0.758558
Target:  5'- aCCgCGCCGGCGCugccccccAAAGACcaauaAGGuCUGGCa -3'
miRNA:   3'- aGG-GCGGCCGCG--------UUUCUG-----UCU-GGUCG- -5'
24671 3' -57.8 NC_005264.1 + 161843 0.73 0.459568
Target:  5'- uUCCCGCCGGUccGCGAGGGgGGAggcccaccugccgccCCAGg -3'
miRNA:   3'- -AGGGCGGCCG--CGUUUCUgUCU---------------GGUCg -5'
24671 3' -57.8 NC_005264.1 + 161662 0.72 0.521517
Target:  5'- gUCCGCUGcguaccccaucGCGCGccGGCAGACUGGCg -3'
miRNA:   3'- aGGGCGGC-----------CGCGUuuCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 161485 0.69 0.690717
Target:  5'- aCCUagGUCGGCGUAAAGGCuugGGGCCuGUc -3'
miRNA:   3'- aGGG--CGGCCGCGUUUCUG---UCUGGuCG- -5'
24671 3' -57.8 NC_005264.1 + 161385 0.72 0.521517
Target:  5'- cCCCGCCGGCGau-GGcCGGugCuGGCu -3'
miRNA:   3'- aGGGCGGCCGCguuUCuGUCugG-UCG- -5'
24671 3' -57.8 NC_005264.1 + 160422 0.67 0.812613
Target:  5'- gUCCG-CGGCcuccGCuuucuuccuAGGCAGGCCGGCg -3'
miRNA:   3'- aGGGCgGCCG----CGuu-------UCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 159989 0.67 0.803952
Target:  5'- -gCCGCagcgggcgaCGGCGCGAGcGC-GACCGGCc -3'
miRNA:   3'- agGGCG---------GCCGCGUUUcUGuCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 159773 0.69 0.720248
Target:  5'- -gCCGCCaGuCGCGgcGAGACAGcguGCCAGUu -3'
miRNA:   3'- agGGCGGcC-GCGU--UUCUGUC---UGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 159739 0.73 0.492909
Target:  5'- aCCUGCUGcGCGCGAuGGCAGACgaAGUg -3'
miRNA:   3'- aGGGCGGC-CGCGUUuCUGUCUGg-UCG- -5'
24671 3' -57.8 NC_005264.1 + 159358 0.67 0.812613
Target:  5'- cCCCGCCGcGUGCGgcGGCAaGCCcaucGCc -3'
miRNA:   3'- aGGGCGGC-CGCGUuuCUGUcUGGu---CG- -5'
24671 3' -57.8 NC_005264.1 + 159311 0.66 0.860241
Target:  5'- -gCCGCCGcGuCGCGguucgacGAGGCGGA-CGGCg -3'
miRNA:   3'- agGGCGGC-C-GCGU-------UUCUGUCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 159027 0.66 0.860992
Target:  5'- cCCCGcCCGGgcccgaacuCGCGGAccgccacGCAGAUCGGCg -3'
miRNA:   3'- aGGGC-GGCC---------GCGUUUc------UGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 158865 0.68 0.749121
Target:  5'- cCCUGCuUGGCGguAAaGCcGGCCGGCg -3'
miRNA:   3'- aGGGCG-GCCGCguUUcUGuCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 158855 0.66 0.845596
Target:  5'- aCCCGCCGcCGcCGAaugcggcuaacAGcauacccgaACAGGCCGGCa -3'
miRNA:   3'- aGGGCGGCcGC-GUU-----------UC---------UGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 158105 0.68 0.72899
Target:  5'- cCCCggacGCCGGCucggcggGCAgcGGCgucuGGACCAGCu -3'
miRNA:   3'- aGGG----CGGCCG-------CGUuuCUG----UCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 157741 0.7 0.639661
Target:  5'- gCUCGCCcccaGGCGUAGaggaccccuccccGGACGGGCUGGCc -3'
miRNA:   3'- aGGGCGG----CCGCGUU-------------UCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 157641 0.7 0.664773
Target:  5'- cCUCGCCgcGGCGCGAgacacgacAggagaucucuuguccGACGGGCCGGCa -3'
miRNA:   3'- aGGGCGG--CCGCGUU--------U---------------CUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 156652 0.67 0.7771
Target:  5'- gUCUCGCaCGGC-CAu-GGC-GACCGGCg -3'
miRNA:   3'- -AGGGCG-GCCGcGUuuCUGuCUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.