miRNA display CGI


Results 1 - 20 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 3' -57.8 NC_005264.1 + 105688 1.11 0.001653
Target:  5'- cUCCCGCCGGCGCAAAGACAGACCAGCc -3'
miRNA:   3'- -AGGGCGGCCGCGUUUCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 13110 0.71 0.560606
Target:  5'- gCCCGCCGGCGCcAcuACAG-CaAGCg -3'
miRNA:   3'- aGGGCGGCCGCGuUucUGUCuGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 55138 0.71 0.58046
Target:  5'- cCCCGCCGuGCGCugu-GCuGGCgCAGCg -3'
miRNA:   3'- aGGGCGGC-CGCGuuucUGuCUG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 120001 0.66 0.871297
Target:  5'- gCCC-CUGGgGCGgcAGGugggccuccccccucGCGGACCGGCg -3'
miRNA:   3'- aGGGcGGCCgCGU--UUC---------------UGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 161843 0.73 0.459568
Target:  5'- uUCCCGCCGGUccGCGAGGGgGGAggcccaccugccgccCCAGg -3'
miRNA:   3'- -AGGGCGGCCG--CGUUUCUgUCU---------------GGUCg -5'
24671 3' -57.8 NC_005264.1 + 64684 0.73 0.465043
Target:  5'- gCCUGCCGGCG----GGCAGGCCGuGCu -3'
miRNA:   3'- aGGGCGGCCGCguuuCUGUCUGGU-CG- -5'
24671 3' -57.8 NC_005264.1 + 144839 0.73 0.474243
Target:  5'- aCCCGCCGcCGuCAGAGcCGGuGCCGGCu -3'
miRNA:   3'- aGGGCGGCcGC-GUUUCuGUC-UGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 120196 0.73 0.492909
Target:  5'- gUCUGCCGGCGCGcgauGGGgguacgcaGCGGACCGGg -3'
miRNA:   3'- aGGGCGGCCGCGU----UUC--------UGUCUGGUCg -5'
24671 3' -57.8 NC_005264.1 + 116654 0.72 0.502368
Target:  5'- gUCCGCCGGCGUGcucGGC-GAUCAGCc -3'
miRNA:   3'- aGGGCGGCCGCGUuu-CUGuCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 77119 0.71 0.550748
Target:  5'- aUCaaaCGCgCGGCGC--AGACGGAUgAGCg -3'
miRNA:   3'- -AGg--GCG-GCCGCGuuUCUGUCUGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 161385 0.72 0.521517
Target:  5'- cCCCGCCGGCGau-GGcCGGugCuGGCu -3'
miRNA:   3'- aGGGCGGCCGCguuUCuGUCugG-UCG- -5'
24671 3' -57.8 NC_005264.1 + 70318 0.73 0.492909
Target:  5'- cCCCGCCGGCGCGcuGACcgAGuCCGu- -3'
miRNA:   3'- aGGGCGGCCGCGUuuCUG--UCuGGUcg -5'
24671 3' -57.8 NC_005264.1 + 64340 0.75 0.386801
Target:  5'- cCCCGUCGGCGCcuccGGCAGAUacuuUAGCa -3'
miRNA:   3'- aGGGCGGCCGCGuuu-CUGUCUG----GUCG- -5'
24671 3' -57.8 NC_005264.1 + 161662 0.72 0.521517
Target:  5'- gUCCGCUGcguaccccaucGCGCGccGGCAGACUGGCg -3'
miRNA:   3'- aGGGCGGC-----------CGCGUuuCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 79444 0.74 0.429213
Target:  5'- aCCCG-CGGCGCGcAGAC-GACgAGCg -3'
miRNA:   3'- aGGGCgGCCGCGUuUCUGuCUGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 34379 0.73 0.492909
Target:  5'- aCuuGCCGaCGcCAAAGACGGGCgCGGCu -3'
miRNA:   3'- aGggCGGCcGC-GUUUCUGUCUG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 119648 0.72 0.540943
Target:  5'- cCCCGCCGGCccGCGucG-CAGG-CAGCg -3'
miRNA:   3'- aGGGCGGCCG--CGUuuCuGUCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 147551 0.71 0.560606
Target:  5'- uUCCCG-CGGCGCGAAGugGccgccGACguGUg -3'
miRNA:   3'- -AGGGCgGCCGCGUUUCugU-----CUGguCG- -5'
24671 3' -57.8 NC_005264.1 + 162701 0.73 0.455937
Target:  5'- gCgCGCCGGCGUuAAGGCGGccGCCGGg -3'
miRNA:   3'- aGgGCGGCCGCGuUUCUGUC--UGGUCg -5'
24671 3' -57.8 NC_005264.1 + 155768 0.73 0.465043
Target:  5'- cCCCGCa-GCGCGAcGGCGccGGCCGGCg -3'
miRNA:   3'- aGGGCGgcCGCGUUuCUGU--CUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.