miRNA display CGI


Results 21 - 40 of 257 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 3' -57.8 NC_005264.1 + 132457 0.71 0.590444
Target:  5'- -aCCGCCGcCGCcGAGACGcGACgCGGCg -3'
miRNA:   3'- agGGCGGCcGCGuUUCUGU-CUG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 55138 0.71 0.58046
Target:  5'- cCCCGCCGuGCGCugu-GCuGGCgCAGCg -3'
miRNA:   3'- aGGGCGGC-CGCGuuucUGuCUG-GUCG- -5'
24671 3' -57.8 NC_005264.1 + 70318 0.73 0.492909
Target:  5'- cCCCGCCGGCGCGcuGACcgAGuCCGu- -3'
miRNA:   3'- aGGGCGGCCGCGUuuCUG--UCuGGUcg -5'
24671 3' -57.8 NC_005264.1 + 162701 0.73 0.455937
Target:  5'- gCgCGCCGGCGUuAAGGCGGccGCCGGg -3'
miRNA:   3'- aGgGCGGCCGCGuUUCUGUC--UGGUCg -5'
24671 3' -57.8 NC_005264.1 + 89388 0.69 0.690717
Target:  5'- --gCGCCGGCuaggcCAAGGGCAGACUGcGCg -3'
miRNA:   3'- aggGCGGCCGc----GUUUCUGUCUGGU-CG- -5'
24671 3' -57.8 NC_005264.1 + 80167 0.7 0.640667
Target:  5'- gUCaCCGggcUCGGCGCGAAGGCGGAau-GCa -3'
miRNA:   3'- -AG-GGC---GGCCGCGUUUCUGUCUgguCG- -5'
24671 3' -57.8 NC_005264.1 + 13110 0.71 0.560606
Target:  5'- gCCCGCCGGCGCcAcuACAG-CaAGCg -3'
miRNA:   3'- aGGGCGGCCGCGuUucUGUCuGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 79444 0.74 0.429213
Target:  5'- aCCCG-CGGCGCGcAGAC-GACgAGCg -3'
miRNA:   3'- aGGGCgGCCGCGUuUCUGuCUGgUCG- -5'
24671 3' -57.8 NC_005264.1 + 157741 0.7 0.639661
Target:  5'- gCUCGCCcccaGGCGUAGaggaccccuccccGGACGGGCUGGCc -3'
miRNA:   3'- aGGGCGG----CCGCGUU-------------UCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 64340 0.75 0.386801
Target:  5'- cCCCGUCGGCGCcuccGGCAGAUacuuUAGCa -3'
miRNA:   3'- aGGGCGGCCGCGuuu-CUGUCUG----GUCG- -5'
24671 3' -57.8 NC_005264.1 + 147551 0.71 0.560606
Target:  5'- uUCCCG-CGGCGCGAAGugGccgccGACguGUg -3'
miRNA:   3'- -AGGGCgGCCGCGUUUCugU-----CUGguCG- -5'
24671 3' -57.8 NC_005264.1 + 96159 0.71 0.599455
Target:  5'- cCCCGcCCGGCGCcgguaguucccuuGAAGgagguuuugaGCAGAgCGGCa -3'
miRNA:   3'- aGGGC-GGCCGCG-------------UUUC----------UGUCUgGUCG- -5'
24671 3' -57.8 NC_005264.1 + 161662 0.72 0.521517
Target:  5'- gUCCGCUGcguaccccaucGCGCGccGGCAGACUGGCg -3'
miRNA:   3'- aGGGCGGC-----------CGCGUuuCUGUCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 116654 0.72 0.502368
Target:  5'- gUCCGCCGGCGUGcucGGC-GAUCAGCc -3'
miRNA:   3'- aGGGCGGCCGCGUuu-CUGuCUGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 144839 0.73 0.474243
Target:  5'- aCCCGCCGcCGuCAGAGcCGGuGCCGGCu -3'
miRNA:   3'- aGGGCGGCcGC-GUUUCuGUC-UGGUCG- -5'
24671 3' -57.8 NC_005264.1 + 161843 0.73 0.459568
Target:  5'- uUCCCGCCGGUccGCGAGGGgGGAggcccaccugccgccCCAGg -3'
miRNA:   3'- -AGGGCGGCCG--CGUUUCUgUCU---------------GGUCg -5'
24671 3' -57.8 NC_005264.1 + 85113 0.69 0.700619
Target:  5'- gUCCC-UCGGCGCAuugcGAGACAaauGCCAcGCg -3'
miRNA:   3'- -AGGGcGGCCGCGU----UUCUGUc--UGGU-CG- -5'
24671 3' -57.8 NC_005264.1 + 98473 0.69 0.690717
Target:  5'- aCCCgGCCGGCacgcGCGAGGGCAucuccUCAGCg -3'
miRNA:   3'- aGGG-CGGCCG----CGUUUCUGUcu---GGUCG- -5'
24671 3' -57.8 NC_005264.1 + 70697 0.7 0.660762
Target:  5'- gCCCGCgGGCgacagcGCGAAGACggAGACUGGa -3'
miRNA:   3'- aGGGCGgCCG------CGUUUCUG--UCUGGUCg -5'
24671 3' -57.8 NC_005264.1 + 42560 0.7 0.650722
Target:  5'- uUCgCGCCGGCaGCcuugccGGAGGCGaGCCAGUa -3'
miRNA:   3'- -AGgGCGGCCG-CG------UUUCUGUcUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.