miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 5' -52.2 NC_005264.1 + 19426 0.66 0.989374
Target:  5'- gGCG-CCGGGUguggCCgcgGgGCGCGGg -3'
miRNA:   3'- -CGCgGGUCCAaaaaGGaa-UgCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 40943 0.66 0.989097
Target:  5'- cGCGCCCcGGUcgaucgcagCCgcaGCGgGCGAc -3'
miRNA:   3'- -CGCGGGuCCAaaaa-----GGaa-UGCgCGCU- -5'
24671 5' -52.2 NC_005264.1 + 110823 0.66 0.989097
Target:  5'- aGCGUUCGGGUcugagcggggUCgCUccGCGCGCGAc -3'
miRNA:   3'- -CGCGGGUCCAaaa-------AG-GAa-UGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 159970 0.66 0.989097
Target:  5'- cGCGCCCcGGUcgaucgcagCCgcaGCGgGCGAc -3'
miRNA:   3'- -CGCGGGuCCAaaaa-----GGaa-UGCgCGCU- -5'
24671 5' -52.2 NC_005264.1 + 39634 0.66 0.987935
Target:  5'- gGCGCUguGGUUUUgc----CGCGCGGc -3'
miRNA:   3'- -CGCGGguCCAAAAaggaauGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 76114 0.66 0.987935
Target:  5'- aUGCCCAGGa--UUCCcauugUACGCG-GAc -3'
miRNA:   3'- cGCGGGUCCaaaAAGGa----AUGCGCgCU- -5'
24671 5' -52.2 NC_005264.1 + 90585 0.66 0.98635
Target:  5'- aGCGCggCAGGUcgcgCCUUGCcCGCGGu -3'
miRNA:   3'- -CGCGg-GUCCAaaaaGGAAUGcGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 41935 0.66 0.98635
Target:  5'- cCGCUCGGcguaGUUUUUCCgc-CGCGUGGu -3'
miRNA:   3'- cGCGGGUC----CAAAAAGGaauGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 24499 0.67 0.980629
Target:  5'- cGCGUUCGGGcg---CCUUGuCGCGCa- -3'
miRNA:   3'- -CGCGGGUCCaaaaaGGAAU-GCGCGcu -5'
24671 5' -52.2 NC_005264.1 + 143744 0.67 0.980411
Target:  5'- cGCGCCgCcgcGGUgcagUCCUggcucccUAUGCGCGGg -3'
miRNA:   3'- -CGCGG-Gu--CCAaaa-AGGA-------AUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 38054 0.67 0.980411
Target:  5'- cGCGugggucuCCCAGcUUUUUUCUUGCGCgGCGu -3'
miRNA:   3'- -CGC-------GGGUCcAAAAAGGAAUGCG-CGCu -5'
24671 5' -52.2 NC_005264.1 + 157081 0.67 0.980411
Target:  5'- cGCGugggucuCCCAGcUUUUUUCUUGCGCgGCGu -3'
miRNA:   3'- -CGC-------GGGUCcAAAAAGGAAUGCG-CGCu -5'
24671 5' -52.2 NC_005264.1 + 102939 0.67 0.980192
Target:  5'- uGCGCCaCAGGgcacuggcCCgcgAUGCGUGAc -3'
miRNA:   3'- -CGCGG-GUCCaaaaa---GGaa-UGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 139025 0.67 0.978372
Target:  5'- cGCuCCCgAGGg---UUCUcGCGCGCGAu -3'
miRNA:   3'- -CGcGGG-UCCaaaaAGGAaUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 23188 0.67 0.978372
Target:  5'- uGCGCCCGGcucggaaauGUUUUggaccgCCgugccgcCGCGCGAg -3'
miRNA:   3'- -CGCGGGUC---------CAAAAa-----GGaau----GCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 116244 0.67 0.977898
Target:  5'- uCGCCCcgcAGGgacagagccUCCgcACGCGCGAc -3'
miRNA:   3'- cGCGGG---UCCaaaa-----AGGaaUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 34226 0.68 0.96738
Target:  5'- cGUGUCCcaagacggacGGGUUUcgUCCcgccucgUGCGCGCGGu -3'
miRNA:   3'- -CGCGGG----------UCCAAAa-AGGa------AUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 73907 0.68 0.964443
Target:  5'- gGCGUgCCAGGcaccuguucuugUCCUccACGCGCGAu -3'
miRNA:   3'- -CGCG-GGUCCaaaa--------AGGAa-UGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 78186 0.68 0.964105
Target:  5'- uGUGCCCGGaaag--CCggAUGCGCGGa -3'
miRNA:   3'- -CGCGGGUCcaaaaaGGaaUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 106070 0.68 0.964105
Target:  5'- aUGCCgGGGU--UUCCUUgcuugGCGUGCGu -3'
miRNA:   3'- cGCGGgUCCAaaAAGGAA-----UGCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.