Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24671 | 5' | -52.2 | NC_005264.1 | + | 136776 | 0.68 | 0.952922 |
Target: 5'- -aGCCCAGugag-UCCUUucgGCGCGUGGc -3' miRNA: 3'- cgCGGGUCcaaaaAGGAA---UGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 10231 | 0.68 | 0.948725 |
Target: 5'- cGCGCCgCGGGUgac-CCgaACGaCGCGGu -3' miRNA: 3'- -CGCGG-GUCCAaaaaGGaaUGC-GCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 79892 | 0.68 | 0.948725 |
Target: 5'- -gGCUCAGGccuggUCUUUGCGUGCGc -3' miRNA: 3'- cgCGGGUCCaaaa-AGGAAUGCGCGCu -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 129258 | 0.68 | 0.948725 |
Target: 5'- cGCGCCgCGGGUgac-CCgaACGaCGCGGu -3' miRNA: 3'- -CGCGG-GUCCAaaaaGGaaUGC-GCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 92192 | 0.69 | 0.944286 |
Target: 5'- cGCGgCCAcGGUguugUUgacgcgCC-UGCGCGCGAa -3' miRNA: 3'- -CGCgGGU-CCAa---AAa-----GGaAUGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 155436 | 0.69 | 0.939604 |
Target: 5'- uGCGCCCAGGaa-UUUUUUACGUcccaggaguugGCGGa -3' miRNA: 3'- -CGCGGGUCCaaaAAGGAAUGCG-----------CGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 36409 | 0.69 | 0.939604 |
Target: 5'- uGCGCCCAGGaa-UUUUUUACGUcccaggaguugGCGGa -3' miRNA: 3'- -CGCGGGUCCaaaAAGGAAUGCG-----------CGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 85835 | 0.69 | 0.938638 |
Target: 5'- cGCGCUCAGuaccgggUCUUGCGCGCa- -3' miRNA: 3'- -CGCGGGUCcaaaaa-GGAAUGCGCGcu -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 130997 | 0.69 | 0.9295 |
Target: 5'- cGCGCCCAuGUcuugCC--GCGCGCGGc -3' miRNA: 3'- -CGCGGGUcCAaaaaGGaaUGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 131588 | 0.7 | 0.909434 |
Target: 5'- gGCGCCUAGGUguggagggagcgGCGCGCGu -3' miRNA: 3'- -CGCGGGUCCAaaaaggaa----UGCGCGCu -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 75790 | 0.7 | 0.899912 |
Target: 5'- cGCGCucgccuCCAGGUcgucgccgUCCguagGCGCGCGGu -3' miRNA: 3'- -CGCG------GGUCCAaaa-----AGGaa--UGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 29194 | 0.71 | 0.871907 |
Target: 5'- -aGCCaCuGGUuaUUUUCUcUACGCGCGAg -3' miRNA: 3'- cgCGG-GuCCA--AAAAGGaAUGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 85458 | 0.71 | 0.856546 |
Target: 5'- -gGCCCuGGaac-UCCUUACGgGCGAc -3' miRNA: 3'- cgCGGGuCCaaaaAGGAAUGCgCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 116701 | 0.72 | 0.840344 |
Target: 5'- cGCGUcuucuaaccugaCCAGGUUUUUCUUUGCcUGCGGc -3' miRNA: 3'- -CGCG------------GGUCCAAAAAGGAAUGcGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 87350 | 0.72 | 0.805646 |
Target: 5'- cGUGCCCcGGUag-UCUcaACGCGCGAc -3' miRNA: 3'- -CGCGGGuCCAaaaAGGaaUGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 123775 | 0.73 | 0.758679 |
Target: 5'- gGCGUCCGGGggUggaCCgc-CGCGCGAa -3' miRNA: 3'- -CGCGGGUCCaaAaa-GGaauGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 4749 | 0.73 | 0.758679 |
Target: 5'- gGCGUCCGGGggUggaCCgc-CGCGCGAa -3' miRNA: 3'- -CGCGGGUCCaaAaa-GGaauGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 105722 | 1.12 | 0.004626 |
Target: 5'- cGCGCCCAGGUUUUUCCUUACGCGCGAa -3' miRNA: 3'- -CGCGGGUCCAAAAAGGAAUGCGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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