Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24671 | 5' | -52.2 | NC_005264.1 | + | 4749 | 0.73 | 0.758679 |
Target: 5'- gGCGUCCGGGggUggaCCgc-CGCGCGAa -3' miRNA: 3'- -CGCGGGUCCaaAaa-GGaauGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 10231 | 0.68 | 0.948725 |
Target: 5'- cGCGCCgCGGGUgac-CCgaACGaCGCGGu -3' miRNA: 3'- -CGCGG-GUCCAaaaaGGaaUGC-GCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 19426 | 0.66 | 0.989374 |
Target: 5'- gGCG-CCGGGUguggCCgcgGgGCGCGGg -3' miRNA: 3'- -CGCgGGUCCAaaaaGGaa-UgCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 23188 | 0.67 | 0.978372 |
Target: 5'- uGCGCCCGGcucggaaauGUUUUggaccgCCgugccgcCGCGCGAg -3' miRNA: 3'- -CGCGGGUC---------CAAAAa-----GGaau----GCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 24499 | 0.67 | 0.980629 |
Target: 5'- cGCGUUCGGGcg---CCUUGuCGCGCa- -3' miRNA: 3'- -CGCGGGUCCaaaaaGGAAU-GCGCGcu -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 29194 | 0.71 | 0.871907 |
Target: 5'- -aGCCaCuGGUuaUUUUCUcUACGCGCGAg -3' miRNA: 3'- cgCGG-GuCCA--AAAAGGaAUGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 34226 | 0.68 | 0.96738 |
Target: 5'- cGUGUCCcaagacggacGGGUUUcgUCCcgccucgUGCGCGCGGu -3' miRNA: 3'- -CGCGGG----------UCCAAAa-AGGa------AUGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 36409 | 0.69 | 0.939604 |
Target: 5'- uGCGCCCAGGaa-UUUUUUACGUcccaggaguugGCGGa -3' miRNA: 3'- -CGCGGGUCCaaaAAGGAAUGCG-----------CGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 38054 | 0.67 | 0.980411 |
Target: 5'- cGCGugggucuCCCAGcUUUUUUCUUGCGCgGCGu -3' miRNA: 3'- -CGC-------GGGUCcAAAAAGGAAUGCG-CGCu -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 39634 | 0.66 | 0.987935 |
Target: 5'- gGCGCUguGGUUUUgc----CGCGCGGc -3' miRNA: 3'- -CGCGGguCCAAAAaggaauGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 40943 | 0.66 | 0.989097 |
Target: 5'- cGCGCCCcGGUcgaucgcagCCgcaGCGgGCGAc -3' miRNA: 3'- -CGCGGGuCCAaaaa-----GGaa-UGCgCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 41935 | 0.66 | 0.98635 |
Target: 5'- cCGCUCGGcguaGUUUUUCCgc-CGCGUGGu -3' miRNA: 3'- cGCGGGUC----CAAAAAGGaauGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 73907 | 0.68 | 0.964443 |
Target: 5'- gGCGUgCCAGGcaccuguucuugUCCUccACGCGCGAu -3' miRNA: 3'- -CGCG-GGUCCaaaa--------AGGAa-UGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 75790 | 0.7 | 0.899912 |
Target: 5'- cGCGCucgccuCCAGGUcgucgccgUCCguagGCGCGCGGu -3' miRNA: 3'- -CGCG------GGUCCAaaa-----AGGaa--UGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 76114 | 0.66 | 0.987935 |
Target: 5'- aUGCCCAGGa--UUCCcauugUACGCG-GAc -3' miRNA: 3'- cGCGGGUCCaaaAAGGa----AUGCGCgCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 78186 | 0.68 | 0.964105 |
Target: 5'- uGUGCCCGGaaag--CCggAUGCGCGGa -3' miRNA: 3'- -CGCGGGUCcaaaaaGGaaUGCGCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 79892 | 0.68 | 0.948725 |
Target: 5'- -gGCUCAGGccuggUCUUUGCGUGCGc -3' miRNA: 3'- cgCGGGUCCaaaa-AGGAAUGCGCGCu -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 85458 | 0.71 | 0.856546 |
Target: 5'- -gGCCCuGGaac-UCCUUACGgGCGAc -3' miRNA: 3'- cgCGGGuCCaaaaAGGAAUGCgCGCU- -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 85835 | 0.69 | 0.938638 |
Target: 5'- cGCGCUCAGuaccgggUCUUGCGCGCa- -3' miRNA: 3'- -CGCGGGUCcaaaaa-GGAAUGCGCGcu -5' |
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24671 | 5' | -52.2 | NC_005264.1 | + | 87350 | 0.72 | 0.805646 |
Target: 5'- cGUGCCCcGGUag-UCUcaACGCGCGAc -3' miRNA: 3'- -CGCGGGuCCAaaaAGGaaUGCGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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