miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 5' -52.2 NC_005264.1 + 90585 0.66 0.98635
Target:  5'- aGCGCggCAGGUcgcgCCUUGCcCGCGGu -3'
miRNA:   3'- -CGCGg-GUCCAaaaaGGAAUGcGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 92192 0.69 0.944286
Target:  5'- cGCGgCCAcGGUguugUUgacgcgCC-UGCGCGCGAa -3'
miRNA:   3'- -CGCgGGU-CCAa---AAa-----GGaAUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 102939 0.67 0.980192
Target:  5'- uGCGCCaCAGGgcacuggcCCgcgAUGCGUGAc -3'
miRNA:   3'- -CGCGG-GUCCaaaaa---GGaa-UGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 105722 1.12 0.004626
Target:  5'- cGCGCCCAGGUUUUUCCUUACGCGCGAa -3'
miRNA:   3'- -CGCGGGUCCAAAAAGGAAUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 106070 0.68 0.964105
Target:  5'- aUGCCgGGGU--UUCCUUgcuugGCGUGCGu -3'
miRNA:   3'- cGCGGgUCCAaaAAGGAA-----UGCGCGCu -5'
24671 5' -52.2 NC_005264.1 + 110823 0.66 0.989097
Target:  5'- aGCGUUCGGGUcugagcggggUCgCUccGCGCGCGAc -3'
miRNA:   3'- -CGCGGGUCCAaaa-------AG-GAa-UGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 116244 0.67 0.977898
Target:  5'- uCGCCCcgcAGGgacagagccUCCgcACGCGCGAc -3'
miRNA:   3'- cGCGGG---UCCaaaa-----AGGaaUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 116701 0.72 0.840344
Target:  5'- cGCGUcuucuaaccugaCCAGGUUUUUCUUUGCcUGCGGc -3'
miRNA:   3'- -CGCG------------GGUCCAAAAAGGAAUGcGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 123775 0.73 0.758679
Target:  5'- gGCGUCCGGGggUggaCCgc-CGCGCGAa -3'
miRNA:   3'- -CGCGGGUCCaaAaa-GGaauGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 129258 0.68 0.948725
Target:  5'- cGCGCCgCGGGUgac-CCgaACGaCGCGGu -3'
miRNA:   3'- -CGCGG-GUCCAaaaaGGaaUGC-GCGCU- -5'
24671 5' -52.2 NC_005264.1 + 130997 0.69 0.9295
Target:  5'- cGCGCCCAuGUcuugCC--GCGCGCGGc -3'
miRNA:   3'- -CGCGGGUcCAaaaaGGaaUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 131588 0.7 0.909434
Target:  5'- gGCGCCUAGGUguggagggagcgGCGCGCGu -3'
miRNA:   3'- -CGCGGGUCCAaaaaggaa----UGCGCGCu -5'
24671 5' -52.2 NC_005264.1 + 136776 0.68 0.952922
Target:  5'- -aGCCCAGugag-UCCUUucgGCGCGUGGc -3'
miRNA:   3'- cgCGGGUCcaaaaAGGAA---UGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 139025 0.67 0.978372
Target:  5'- cGCuCCCgAGGg---UUCUcGCGCGCGAu -3'
miRNA:   3'- -CGcGGG-UCCaaaaAGGAaUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 143744 0.67 0.980411
Target:  5'- cGCGCCgCcgcGGUgcagUCCUggcucccUAUGCGCGGg -3'
miRNA:   3'- -CGCGG-Gu--CCAaaa-AGGA-------AUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 155436 0.69 0.939604
Target:  5'- uGCGCCCAGGaa-UUUUUUACGUcccaggaguugGCGGa -3'
miRNA:   3'- -CGCGGGUCCaaaAAGGAAUGCG-----------CGCU- -5'
24671 5' -52.2 NC_005264.1 + 157081 0.67 0.980411
Target:  5'- cGCGugggucuCCCAGcUUUUUUCUUGCGCgGCGu -3'
miRNA:   3'- -CGC-------GGGUCcAAAAAGGAAUGCG-CGCu -5'
24671 5' -52.2 NC_005264.1 + 159970 0.66 0.989097
Target:  5'- cGCGCCCcGGUcgaucgcagCCgcaGCGgGCGAc -3'
miRNA:   3'- -CGCGGGuCCAaaaa-----GGaa-UGCgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.