miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24671 5' -52.2 NC_005264.1 + 155436 0.69 0.939604
Target:  5'- uGCGCCCAGGaa-UUUUUUACGUcccaggaguugGCGGa -3'
miRNA:   3'- -CGCGGGUCCaaaAAGGAAUGCG-----------CGCU- -5'
24671 5' -52.2 NC_005264.1 + 41935 0.66 0.98635
Target:  5'- cCGCUCGGcguaGUUUUUCCgc-CGCGUGGu -3'
miRNA:   3'- cGCGGGUC----CAAAAAGGaauGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 19426 0.66 0.989374
Target:  5'- gGCG-CCGGGUguggCCgcgGgGCGCGGg -3'
miRNA:   3'- -CGCgGGUCCAaaaaGGaa-UgCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 105722 1.12 0.004626
Target:  5'- cGCGCCCAGGUUUUUCCUUACGCGCGAa -3'
miRNA:   3'- -CGCGGGUCCAAAAAGGAAUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 123775 0.73 0.758679
Target:  5'- gGCGUCCGGGggUggaCCgc-CGCGCGAa -3'
miRNA:   3'- -CGCGGGUCCaaAaa-GGaauGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 87350 0.72 0.805646
Target:  5'- cGUGCCCcGGUag-UCUcaACGCGCGAc -3'
miRNA:   3'- -CGCGGGuCCAaaaAGGaaUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 85458 0.71 0.856546
Target:  5'- -gGCCCuGGaac-UCCUUACGgGCGAc -3'
miRNA:   3'- cgCGGGuCCaaaaAGGAAUGCgCGCU- -5'
24671 5' -52.2 NC_005264.1 + 29194 0.71 0.871907
Target:  5'- -aGCCaCuGGUuaUUUUCUcUACGCGCGAg -3'
miRNA:   3'- cgCGG-GuCCA--AAAAGGaAUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 75790 0.7 0.899912
Target:  5'- cGCGCucgccuCCAGGUcgucgccgUCCguagGCGCGCGGu -3'
miRNA:   3'- -CGCG------GGUCCAaaa-----AGGaa--UGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 90585 0.66 0.98635
Target:  5'- aGCGCggCAGGUcgcgCCUUGCcCGCGGu -3'
miRNA:   3'- -CGCGg-GUCCAaaaaGGAAUGcGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 23188 0.67 0.978372
Target:  5'- uGCGCCCGGcucggaaauGUUUUggaccgCCgugccgcCGCGCGAg -3'
miRNA:   3'- -CGCGGGUC---------CAAAAa-----GGaau----GCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 34226 0.68 0.96738
Target:  5'- cGUGUCCcaagacggacGGGUUUcgUCCcgccucgUGCGCGCGGu -3'
miRNA:   3'- -CGCGGG----------UCCAAAa-AGGa------AUGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 79892 0.68 0.948725
Target:  5'- -gGCUCAGGccuggUCUUUGCGUGCGc -3'
miRNA:   3'- cgCGGGUCCaaaa-AGGAAUGCGCGCu -5'
24671 5' -52.2 NC_005264.1 + 157081 0.67 0.980411
Target:  5'- cGCGugggucuCCCAGcUUUUUUCUUGCGCgGCGu -3'
miRNA:   3'- -CGC-------GGGUCcAAAAAGGAAUGCG-CGCu -5'
24671 5' -52.2 NC_005264.1 + 129258 0.68 0.948725
Target:  5'- cGCGCCgCGGGUgac-CCgaACGaCGCGGu -3'
miRNA:   3'- -CGCGG-GUCCAaaaaGGaaUGC-GCGCU- -5'
24671 5' -52.2 NC_005264.1 + 106070 0.68 0.964105
Target:  5'- aUGCCgGGGU--UUCCUUgcuugGCGUGCGu -3'
miRNA:   3'- cGCGGgUCCAaaAAGGAA-----UGCGCGCu -5'
24671 5' -52.2 NC_005264.1 + 24499 0.67 0.980629
Target:  5'- cGCGUUCGGGcg---CCUUGuCGCGCa- -3'
miRNA:   3'- -CGCGGGUCCaaaaaGGAAU-GCGCGcu -5'
24671 5' -52.2 NC_005264.1 + 39634 0.66 0.987935
Target:  5'- gGCGCUguGGUUUUgc----CGCGCGGc -3'
miRNA:   3'- -CGCGGguCCAAAAaggaauGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 136776 0.68 0.952922
Target:  5'- -aGCCCAGugag-UCCUUucgGCGCGUGGc -3'
miRNA:   3'- cgCGGGUCcaaaaAGGAA---UGCGCGCU- -5'
24671 5' -52.2 NC_005264.1 + 78186 0.68 0.964105
Target:  5'- uGUGCCCGGaaag--CCggAUGCGCGGa -3'
miRNA:   3'- -CGCGGGUCcaaaaaGGaaUGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.