miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24672 3' -59.9 NC_005264.1 + 27133 0.66 0.734352
Target:  5'- -aAGUGGGCCaugAGCCcgagGGCCggCCCGu -3'
miRNA:   3'- ugUCAUCCGGa--UCGGua--CCGG--GGGUc -5'
24672 3' -59.9 NC_005264.1 + 59248 0.66 0.724659
Target:  5'- uCAGgGGGCCacGCCGUGGCCgaUCCGa -3'
miRNA:   3'- uGUCaUCCGGauCGGUACCGG--GGGUc -5'
24672 3' -59.9 NC_005264.1 + 107277 0.66 0.724659
Target:  5'- uGCAGUGGGCCgcGCUccccCCUCCAGu -3'
miRNA:   3'- -UGUCAUCCGGauCGGuaccGGGGGUC- -5'
24672 3' -59.9 NC_005264.1 + 135700 0.66 0.723685
Target:  5'- gACGGgccGGCCcucgGGCuCAUGGCccauuccauugggCCCCAGa -3'
miRNA:   3'- -UGUCau-CCGGa---UCG-GUACCG-------------GGGGUC- -5'
24672 3' -59.9 NC_005264.1 + 73449 0.66 0.714888
Target:  5'- cGCAGUcugcccuuGGCCUAGCCGgcgcuuGCCgUCAGg -3'
miRNA:   3'- -UGUCAu-------CCGGAUCGGUac----CGGgGGUC- -5'
24672 3' -59.9 NC_005264.1 + 136742 0.67 0.685199
Target:  5'- cGCGGU-GGCCaguuUAGCUAUGGCCaaaaacagcgCCGGg -3'
miRNA:   3'- -UGUCAuCCGG----AUCGGUACCGGg---------GGUC- -5'
24672 3' -59.9 NC_005264.1 + 116292 0.67 0.675207
Target:  5'- cGCGGgcGGCUacGGCUGUGGCCUUCGa -3'
miRNA:   3'- -UGUCauCCGGa-UCGGUACCGGGGGUc -5'
24672 3' -59.9 NC_005264.1 + 99752 0.67 0.675207
Target:  5'- -aGGUAGGCCUuuccGCgAcGGCCCUCGc -3'
miRNA:   3'- ugUCAUCCGGAu---CGgUaCCGGGGGUc -5'
24672 3' -59.9 NC_005264.1 + 82167 0.67 0.655127
Target:  5'- --uGUcuGuCCUGGCCAUGGCCCUCu- -3'
miRNA:   3'- uguCAucC-GGAUCGGUACCGGGGGuc -5'
24672 3' -59.9 NC_005264.1 + 92499 0.67 0.655127
Target:  5'- gGCGGUGcGCCUGGCCAucugUGGaUCCgCGGa -3'
miRNA:   3'- -UGUCAUcCGGAUCGGU----ACC-GGGgGUC- -5'
24672 3' -59.9 NC_005264.1 + 67024 0.67 0.645057
Target:  5'- aGCGGc-GGCCUuGCgCA-GGCCCCCGa -3'
miRNA:   3'- -UGUCauCCGGAuCG-GUaCCGGGGGUc -5'
24672 3' -59.9 NC_005264.1 + 118139 0.67 0.645057
Target:  5'- -gAGUGGGguacaugaacUCUAuGCCGUGGCCgCCCAu -3'
miRNA:   3'- ugUCAUCC----------GGAU-CGGUACCGG-GGGUc -5'
24672 3' -59.9 NC_005264.1 + 13357 0.68 0.624893
Target:  5'- aACGucgGGGCCgAGCCggGGCCCgCGGc -3'
miRNA:   3'- -UGUca-UCCGGaUCGGuaCCGGGgGUC- -5'
24672 3' -59.9 NC_005264.1 + 132384 0.68 0.624893
Target:  5'- aACGucgGGGCCgAGCCggGGCCCgCGGc -3'
miRNA:   3'- -UGUca-UCCGGaUCGGuaCCGGGgGUC- -5'
24672 3' -59.9 NC_005264.1 + 114489 0.68 0.614816
Target:  5'- cGCAacgAGGCC--GCCAUGGCgugcgccaacuCCCCAGg -3'
miRNA:   3'- -UGUca-UCCGGauCGGUACCG-----------GGGGUC- -5'
24672 3' -59.9 NC_005264.1 + 98437 0.68 0.614816
Target:  5'- cGCGGcgucGGCCuUGGCCG-GGCUUCCAGa -3'
miRNA:   3'- -UGUCau--CCGG-AUCGGUaCCGGGGGUC- -5'
24672 3' -59.9 NC_005264.1 + 68261 0.68 0.594706
Target:  5'- cGCGGgcGGCCUGcugcugccGCCucuuUGcGUCCCCAGc -3'
miRNA:   3'- -UGUCauCCGGAU--------CGGu---AC-CGGGGGUC- -5'
24672 3' -59.9 NC_005264.1 + 17811 0.69 0.554857
Target:  5'- gGCGGUAGGcCCUGGCCAcGGCaaaUUUAGc -3'
miRNA:   3'- -UGUCAUCC-GGAUCGGUaCCGg--GGGUC- -5'
24672 3' -59.9 NC_005264.1 + 19300 0.69 0.554857
Target:  5'- cCAGaggAGGC--AGCCGgacacaGGCCCCCAGg -3'
miRNA:   3'- uGUCa--UCCGgaUCGGUa-----CCGGGGGUC- -5'
24672 3' -59.9 NC_005264.1 + 122891 0.69 0.545009
Target:  5'- cGCAGccgAGGUC--GCCGUGGCCCCa-- -3'
miRNA:   3'- -UGUCa--UCCGGauCGGUACCGGGGguc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.