miRNA display CGI


Results 1 - 20 of 189 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24672 5' -60.9 NC_005264.1 + 100 0.67 0.641648
Target:  5'- cGCaCGCGGGCCGCUcgAguuuccuuuucccGCUccccGGcGGCCGCc -3'
miRNA:   3'- uCG-GUGCUCGGCGA--U-------------CGA----UC-CCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 239 0.66 0.711584
Target:  5'- uGCCugGcGCCaC-AGCgaggcGGGCCGCu -3'
miRNA:   3'- uCGGugCuCGGcGaUCGau---CCCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 910 0.72 0.374929
Target:  5'- uGUCGCGGGCCGCUGGggGGaaGGUCGg -3'
miRNA:   3'- uCGGUGCUCGGCGAUCgaUC--CCGGCg -5'
24672 5' -60.9 NC_005264.1 + 1123 0.69 0.505803
Target:  5'- uGgCGCGGGUCGUUGuGCaugcgGGGGUCGCg -3'
miRNA:   3'- uCgGUGCUCGGCGAU-CGa----UCCCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 2809 0.69 0.505803
Target:  5'- uGCCugGgAGCCcaccuaaacggGUUGGCggAGGGCCGg -3'
miRNA:   3'- uCGGugC-UCGG-----------CGAUCGa-UCCCGGCg -5'
24672 5' -60.9 NC_005264.1 + 3611 0.72 0.344093
Target:  5'- cGCCGCGgggGGCCGCgagGGC--GGGCgCGCu -3'
miRNA:   3'- uCGGUGC---UCGGCGa--UCGauCCCG-GCG- -5'
24672 5' -60.9 NC_005264.1 + 3810 0.71 0.416018
Target:  5'- cGGuCCGCGAGUUcggGCccgGGC-GGGGCCGCa -3'
miRNA:   3'- -UC-GGUGCUCGG---CGa--UCGaUCCCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 3966 0.71 0.416018
Target:  5'- uGGCCGCGccGGCCgGCUuuaccgccAGC-AGGGCgGCa -3'
miRNA:   3'- -UCGGUGC--UCGG-CGA--------UCGaUCCCGgCG- -5'
24672 5' -60.9 NC_005264.1 + 4495 0.67 0.652576
Target:  5'- gGGUCGCGAGCgGaggggGGaCUGGGcGuCCGCg -3'
miRNA:   3'- -UCGGUGCUCGgCga---UC-GAUCC-C-GGCG- -5'
24672 5' -60.9 NC_005264.1 + 5031 0.71 0.407581
Target:  5'- aGGCCACGAGguuCCGCgucgUGGGcGCCGCc -3'
miRNA:   3'- -UCGGUGCUC---GGCGaucgAUCC-CGGCG- -5'
24672 5' -60.9 NC_005264.1 + 5261 0.67 0.612821
Target:  5'- cGCCgggagGCGAGUCGCggccggacGGC-GGGGCgGCg -3'
miRNA:   3'- uCGG-----UGCUCGGCGa-------UCGaUCCCGgCG- -5'
24672 5' -60.9 NC_005264.1 + 5606 0.72 0.359279
Target:  5'- cGGCgACcgGAGCCGCUAuc--GGGCCGCg -3'
miRNA:   3'- -UCGgUG--CUCGGCGAUcgauCCCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 6323 0.75 0.248557
Target:  5'- gAGCCGCGAGCCcccguaGCUGuGCgauacgcgggacaGGGGCUGCa -3'
miRNA:   3'- -UCGGUGCUCGG------CGAU-CGa------------UCCCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 6493 0.66 0.692082
Target:  5'- cGGCCAUcgaGGGCCGgUAGCcGGucuuGCCGUa -3'
miRNA:   3'- -UCGGUG---CUCGGCgAUCGaUCc---CGGCG- -5'
24672 5' -60.9 NC_005264.1 + 6888 0.66 0.702836
Target:  5'- cGuCCGCGAGCCGCgcagucccagcgcgcGGCUuuccguGGG-CGCg -3'
miRNA:   3'- uC-GGUGCUCGGCGa--------------UCGAu-----CCCgGCG- -5'
24672 5' -60.9 NC_005264.1 + 7835 0.66 0.682256
Target:  5'- uGCCcauacacguACGAGCuacCGCUAGauugugGGGGCgGCg -3'
miRNA:   3'- uCGG---------UGCUCG---GCGAUCga----UCCCGgCG- -5'
24672 5' -60.9 NC_005264.1 + 7952 0.67 0.601907
Target:  5'- cGGCCGCGGcgucuuuGUCGCUGcCUAGaGGUCGUu -3'
miRNA:   3'- -UCGGUGCU-------CGGCGAUcGAUC-CCGGCG- -5'
24672 5' -60.9 NC_005264.1 + 7988 0.7 0.459749
Target:  5'- cGUgCACGGGCCGCcauuGC-GGGGCCGg -3'
miRNA:   3'- uCG-GUGCUCGGCGau--CGaUCCCGGCg -5'
24672 5' -60.9 NC_005264.1 + 8066 0.67 0.612821
Target:  5'- cGUCGCG-GCCGCagucgGGCacGGGCgGCg -3'
miRNA:   3'- uCGGUGCuCGGCGa----UCGauCCCGgCG- -5'
24672 5' -60.9 NC_005264.1 + 9076 0.73 0.329373
Target:  5'- cGCUgaggACGAGCgaUGCcAGCUGGGGCCGa -3'
miRNA:   3'- uCGG----UGCUCG--GCGaUCGAUCCCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.