miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24673 3' -56.2 NC_005264.1 + 66430 0.66 0.893736
Target:  5'- gAAUCUCGcuaacgauucgggcGCUUCCGauggGGAGAuGGCACc -3'
miRNA:   3'- gUUAGAGC--------------CGGAGGCg---CCUUU-CCGUG- -5'
24673 3' -56.2 NC_005264.1 + 64676 0.66 0.889041
Target:  5'- gGGUUUgGGCCUgCCgGCGGgcAGGC-Cg -3'
miRNA:   3'- gUUAGAgCCGGA-GG-CGCCuuUCCGuG- -5'
24673 3' -56.2 NC_005264.1 + 120234 0.66 0.882142
Target:  5'- -cGUCcgCGGCCauggCUGCGGGGuuGCACa -3'
miRNA:   3'- guUAGa-GCCGGa---GGCGCCUUucCGUG- -5'
24673 3' -56.2 NC_005264.1 + 156163 0.66 0.882142
Target:  5'- -cGUCUCGGCCUC-GCuGcu-GGCGCc -3'
miRNA:   3'- guUAGAGCCGGAGgCGcCuuuCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 35009 0.66 0.882142
Target:  5'- -----cCGGCCgCCGCGGA--GGCAa -3'
miRNA:   3'- guuagaGCCGGaGGCGCCUuuCCGUg -5'
24673 3' -56.2 NC_005264.1 + 37136 0.66 0.882142
Target:  5'- -cGUCUCGGCCUC-GCuGcu-GGCGCc -3'
miRNA:   3'- guUAGAGCCGGAGgCGcCuuuCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 122031 0.66 0.882142
Target:  5'- gAGUCUCGGCgaccCCGCGGcAAGcGGCu- -3'
miRNA:   3'- gUUAGAGCCGga--GGCGCC-UUU-CCGug -5'
24673 3' -56.2 NC_005264.1 + 1207 0.66 0.882142
Target:  5'- -cGUCcgCGGCCauggCUGCGGGGuuGCACa -3'
miRNA:   3'- guUAGa-GCCGGa---GGCGCCUUucCGUG- -5'
24673 3' -56.2 NC_005264.1 + 3121 0.67 0.870644
Target:  5'- aGGUCUCGGUuucucguacacauguCaUCCGUGGGcAGGGCAa -3'
miRNA:   3'- gUUAGAGCCG---------------G-AGGCGCCU-UUCCGUg -5'
24673 3' -56.2 NC_005264.1 + 56511 0.67 0.867683
Target:  5'- ---gCUgGGgCUCUGUGGAGGGGuCGCc -3'
miRNA:   3'- guuaGAgCCgGAGGCGCCUUUCC-GUG- -5'
24673 3' -56.2 NC_005264.1 + 4254 0.67 0.867683
Target:  5'- uCAGUCcCGGCUUgccgcgcgggaaCCGCGGGgcGGCGg -3'
miRNA:   3'- -GUUAGaGCCGGA------------GGCGCCUuuCCGUg -5'
24673 3' -56.2 NC_005264.1 + 123281 0.67 0.867683
Target:  5'- uCAGUCcCGGCUUgccgcgcgggaaCCGCGGGgcGGCGg -3'
miRNA:   3'- -GUUAGaGCCGGA------------GGCGCCUuuCCGUg -5'
24673 3' -56.2 NC_005264.1 + 154560 0.67 0.860133
Target:  5'- gGAUCUcccCGGCCUgCaacgagGCGGAcaccAGGGCGCc -3'
miRNA:   3'- gUUAGA---GCCGGAgG------CGCCU----UUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 97652 0.67 0.860133
Target:  5'- aCAG-CUCGGCgaaaaggCCGCGGccauggccagaGAGGGCGCc -3'
miRNA:   3'- -GUUaGAGCCGga-----GGCGCC-----------UUUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 51347 0.67 0.860133
Target:  5'- gGGUgUC-GCCgCCGacaGGAAGGGCGCa -3'
miRNA:   3'- gUUAgAGcCGGaGGCg--CCUUUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 58255 0.67 0.852378
Target:  5'- ---aCUCGGCCcgaucCCGUGGGcggcauGGCGCu -3'
miRNA:   3'- guuaGAGCCGGa----GGCGCCUuu----CCGUG- -5'
24673 3' -56.2 NC_005264.1 + 56733 0.67 0.852378
Target:  5'- --cUgUCGuGCCuuUCCGCGGAGGccgagauuGGCACg -3'
miRNA:   3'- guuAgAGC-CGG--AGGCGCCUUU--------CCGUG- -5'
24673 3' -56.2 NC_005264.1 + 137814 0.67 0.844422
Target:  5'- ---cCUUGGCCgggcgCCucaGGAGAGGCAUg -3'
miRNA:   3'- guuaGAGCCGGa----GGcg-CCUUUCCGUG- -5'
24673 3' -56.2 NC_005264.1 + 143758 0.67 0.844422
Target:  5'- gCAGUCcUGGCUcccuaUgCGCGGGAAGcGCGCu -3'
miRNA:   3'- -GUUAGaGCCGG-----AgGCGCCUUUC-CGUG- -5'
24673 3' -56.2 NC_005264.1 + 84534 0.67 0.836275
Target:  5'- aCGAUCU-GGCaagUCGCGGAAgccGGGCAa -3'
miRNA:   3'- -GUUAGAgCCGga-GGCGCCUU---UCCGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.