miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24673 5' -60.7 NC_005264.1 + 56242 0.67 0.596625
Target:  5'- cGcGCGGCUuuUGUCGagGUGGCGGGCa-- -3'
miRNA:   3'- aC-CGUCGA--ACAGCg-CGCCGCUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 29153 0.67 0.596625
Target:  5'- cGGCGGCaaGgacCGCGGCGAGCa-- -3'
miRNA:   3'- aCCGUCGaaCagcGCGCCGCUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 24448 0.67 0.595622
Target:  5'- aUGGCccauagcgacuGGCUUGUUcCGCGGCGgauaacucgugagGGCCUa -3'
miRNA:   3'- -ACCG-----------UCGAACAGcGCGCCGC-------------UCGGAa -5'
24673 5' -60.7 NC_005264.1 + 115727 0.67 0.586608
Target:  5'- cGGCauGGUagGggGCGCGGCGAGCgCUa -3'
miRNA:   3'- aCCG--UCGaaCagCGCGCCGCUCG-GAa -5'
24673 5' -60.7 NC_005264.1 + 57489 0.67 0.586608
Target:  5'- cGGCGGCgaagaugcUGgcgCGCGCGGCG-GCg-- -3'
miRNA:   3'- aCCGUCGa-------ACa--GCGCGCCGCuCGgaa -5'
24673 5' -60.7 NC_005264.1 + 26118 0.67 0.583609
Target:  5'- cGcGCGGCUcGUgGCGCggcgccgagagaauGGCGAGCCc- -3'
miRNA:   3'- aC-CGUCGAaCAgCGCG--------------CCGCUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 46455 0.68 0.566676
Target:  5'- -uGCGGCUU-UUGCGCGGCGcucuuuGCCUg -3'
miRNA:   3'- acCGUCGAAcAGCGCGCCGCu-----CGGAa -5'
24673 5' -60.7 NC_005264.1 + 17361 0.68 0.556774
Target:  5'- cGGCAGCUgg-CG-GCGGCGcGGUCUg -3'
miRNA:   3'- aCCGUCGAacaGCgCGCCGC-UCGGAa -5'
24673 5' -60.7 NC_005264.1 + 8317 0.68 0.556774
Target:  5'- cGGCAcGCUUGUuugCGCGCGGCaugugcGCCc- -3'
miRNA:   3'- aCCGU-CGAACA---GCGCGCCGcu----CGGaa -5'
24673 5' -60.7 NC_005264.1 + 42567 0.68 0.537127
Target:  5'- cGGCAGcCUUGcCG-GaGGCGAGCCa- -3'
miRNA:   3'- aCCGUC-GAACaGCgCgCCGCUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 5294 0.68 0.527393
Target:  5'- cGGCGGCUgaccCGUGgGGCGGGCg-- -3'
miRNA:   3'- aCCGUCGAaca-GCGCgCCGCUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 124321 0.68 0.527393
Target:  5'- cGGCGGCUgaccCGUGgGGCGGGCg-- -3'
miRNA:   3'- aCCGUCGAaca-GCGCgCCGCUCGgaa -5'
24673 5' -60.7 NC_005264.1 + 96211 0.69 0.517725
Target:  5'- uUGGCAGCUUGccUCGgGCcGCGAcggcGCCg- -3'
miRNA:   3'- -ACCGUCGAAC--AGCgCGcCGCU----CGGaa -5'
24673 5' -60.7 NC_005264.1 + 48385 0.69 0.517725
Target:  5'- cGGUAGaCUggggcGUCGgGCGGCG-GCCa- -3'
miRNA:   3'- aCCGUC-GAa----CAGCgCGCCGCuCGGaa -5'
24673 5' -60.7 NC_005264.1 + 98678 0.69 0.516762
Target:  5'- cUGGCGgcGCUUGcacaccggccggaUCGCggcgccGUGGCGAGCCUg -3'
miRNA:   3'- -ACCGU--CGAAC-------------AGCG------CGCCGCUCGGAa -5'
24673 5' -60.7 NC_005264.1 + 132102 0.69 0.489168
Target:  5'- cUGaGCGGCUcuUUGCGCGGgaaGAGCCUc -3'
miRNA:   3'- -AC-CGUCGAacAGCGCGCCg--CUCGGAa -5'
24673 5' -60.7 NC_005264.1 + 81895 0.69 0.479813
Target:  5'- uUGGCGGCgaUGg-GCG-GGCGAGCCa- -3'
miRNA:   3'- -ACCGUCGa-ACagCGCgCCGCUCGGaa -5'
24673 5' -60.7 NC_005264.1 + 27631 0.69 0.479813
Target:  5'- aGGCGGCUgGUCGCGCGaacuCGuuuGGCCa- -3'
miRNA:   3'- aCCGUCGAaCAGCGCGCc---GC---UCGGaa -5'
24673 5' -60.7 NC_005264.1 + 146322 0.69 0.479813
Target:  5'- aGGCGuGCUUGUaccauccgucUGCGcCGGCGuGCCUc -3'
miRNA:   3'- aCCGU-CGAACA----------GCGC-GCCGCuCGGAa -5'
24673 5' -60.7 NC_005264.1 + 42024 0.7 0.45229
Target:  5'- cGGCGGCagUGUCGaCGCGcacGCG-GCCUa -3'
miRNA:   3'- aCCGUCGa-ACAGC-GCGC---CGCuCGGAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.