miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 3' -57.9 NC_005264.1 + 47307 0.66 0.862274
Target:  5'- --gAUGGCAGcgGGGAACUgcCCGCGUcGAg -3'
miRNA:   3'- ugaUGCCGUC--UCCUUGA--GGCGCGcCU- -5'
24674 3' -57.9 NC_005264.1 + 147472 0.66 0.862274
Target:  5'- cACUGCGGCAccGGGGCUagUGUGUGGc -3'
miRNA:   3'- -UGAUGCCGUcuCCUUGAg-GCGCGCCu -5'
24674 3' -57.9 NC_005264.1 + 146746 0.66 0.862274
Target:  5'- aACgaggGCGGCGGAcccGGcAACagcaagcgCCGCGCGGc -3'
miRNA:   3'- -UGa---UGCCGUCU---CC-UUGa-------GGCGCGCCu -5'
24674 3' -57.9 NC_005264.1 + 109365 0.66 0.862274
Target:  5'- uCUAUGGUGGGGGAGUUCgGcCGuCGGAa -3'
miRNA:   3'- uGAUGCCGUCUCCUUGAGgC-GC-GCCU- -5'
24674 3' -57.9 NC_005264.1 + 121893 0.66 0.854712
Target:  5'- cGCUGCGGCugcGAucgaccGGGGCgCgGCGCGGc -3'
miRNA:   3'- -UGAUGCCGu--CU------CCUUGaGgCGCGCCu -5'
24674 3' -57.9 NC_005264.1 + 2867 0.66 0.854712
Target:  5'- cGCUGCGGCugcGAucgaccGGGGCgCgGCGCGGc -3'
miRNA:   3'- -UGAUGCCGu--CU------CCUUGaGgCGCGCCu -5'
24674 3' -57.9 NC_005264.1 + 75212 0.66 0.846955
Target:  5'- --gACGuGCAGAGGGuuugcCUCUGgCGCGGc -3'
miRNA:   3'- ugaUGC-CGUCUCCUu----GAGGC-GCGCCu -5'
24674 3' -57.9 NC_005264.1 + 78024 0.66 0.846955
Target:  5'- --gACGGC-GAGGcuucGCUCCGUGCGc- -3'
miRNA:   3'- ugaUGCCGuCUCCu---UGAGGCGCGCcu -5'
24674 3' -57.9 NC_005264.1 + 113704 0.66 0.83901
Target:  5'- gGCUugGGCAGAGGcGCcUCGCaCGa- -3'
miRNA:   3'- -UGAugCCGUCUCCuUGaGGCGcGCcu -5'
24674 3' -57.9 NC_005264.1 + 91561 0.66 0.830884
Target:  5'- --cGCGGCGGGGGGcacgagGCUUguCGCGGAg -3'
miRNA:   3'- ugaUGCCGUCUCCU------UGAGgcGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 107026 0.67 0.822583
Target:  5'- cACcGCGGCGauGuGGAAUUuuGgGCGGAa -3'
miRNA:   3'- -UGaUGCCGU--CuCCUUGAggCgCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 132519 0.67 0.822583
Target:  5'- aGCU-CGGgAGAGGucGACuUCCGCGaCGGc -3'
miRNA:   3'- -UGAuGCCgUCUCC--UUG-AGGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 13492 0.67 0.822583
Target:  5'- aGCU-CGGgAGAGGucGACuUCCGCGaCGGc -3'
miRNA:   3'- -UGAuGCCgUCUCC--UUG-AGGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 134107 0.67 0.822583
Target:  5'- gGCgcaGGCuGAGacuaguGCUUCGCGCGGAu -3'
miRNA:   3'- -UGaugCCGuCUCcu----UGAGGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 110833 0.67 0.822583
Target:  5'- uCUGa-GCGGGGucGCUCCGCGCGcGAc -3'
miRNA:   3'- uGAUgcCGUCUCcuUGAGGCGCGC-CU- -5'
24674 3' -57.9 NC_005264.1 + 55212 0.67 0.814116
Target:  5'- cUUGCGGCuauGGuGGAACacgCCGCugaaGCGGAa -3'
miRNA:   3'- uGAUGCCG---UCuCCUUGa--GGCG----CGCCU- -5'
24674 3' -57.9 NC_005264.1 + 123973 0.67 0.814116
Target:  5'- --gGCGGUGuacacccgcGAGGAGCUCCGCGaCGu- -3'
miRNA:   3'- ugaUGCCGU---------CUCCUUGAGGCGC-GCcu -5'
24674 3' -57.9 NC_005264.1 + 92732 0.67 0.804617
Target:  5'- --cGCGGCAGcucgauaAGGucCUCCGCGCcGAc -3'
miRNA:   3'- ugaUGCCGUC-------UCCuuGAGGCGCGcCU- -5'
24674 3' -57.9 NC_005264.1 + 122407 0.67 0.796709
Target:  5'- --gGCGGC-GAGGGcuuCUCCGgaaCGCGGGg -3'
miRNA:   3'- ugaUGCCGuCUCCUu--GAGGC---GCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 3380 0.67 0.796709
Target:  5'- --gGCGGC-GAGGGcuuCUCCGgaaCGCGGGg -3'
miRNA:   3'- ugaUGCCGuCUCCUu--GAGGC---GCGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.