miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 3' -57.9 NC_005264.1 + 106666 1.08 0.002254
Target:  5'- gACUACGGCAGAGGAACUCCGCGCGGAg -3'
miRNA:   3'- -UGAUGCCGUCUCCUUGAGGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 155235 0.81 0.167951
Target:  5'- uGCUGCGGCGGGGGAugaggaagcauCUCCGCaGCGGc -3'
miRNA:   3'- -UGAUGCCGUCUCCUu----------GAGGCG-CGCCu -5'
24674 3' -57.9 NC_005264.1 + 30425 0.78 0.247191
Target:  5'- aGCUGCGGCGGAGGAGgUCuCGggggagcCGCGGGc -3'
miRNA:   3'- -UGAUGCCGUCUCCUUgAG-GC-------GCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 149452 0.78 0.247191
Target:  5'- aGCUGCGGCGGAGGAGgUCuCGggggagcCGCGGGc -3'
miRNA:   3'- -UGAUGCCGUCUCCUUgAG-GC-------GCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 82059 0.75 0.348851
Target:  5'- gGCUACGGcCAGGccaGAuCUCUGCGCGGAg -3'
miRNA:   3'- -UGAUGCC-GUCUc--CUuGAGGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 91441 0.74 0.422279
Target:  5'- --cAUGGCccuAGAGGcgaugacGCUCCGCGCGGAu -3'
miRNA:   3'- ugaUGCCG---UCUCCu------UGAGGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 146616 0.73 0.439817
Target:  5'- aACUgAUGGCAGAGGGGucguCUCCGCGUGu- -3'
miRNA:   3'- -UGA-UGCCGUCUCCUU----GAGGCGCGCcu -5'
24674 3' -57.9 NC_005264.1 + 60838 0.73 0.44874
Target:  5'- -gUACGGUAGGGGAaagcaGCUUCG-GCGGAg -3'
miRNA:   3'- ugAUGCCGUCUCCU-----UGAGGCgCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 132478 0.72 0.504248
Target:  5'- --cGCGGCGGcgccgaAGGGGCUCCuGCGgGGAc -3'
miRNA:   3'- ugaUGCCGUC------UCCUUGAGG-CGCgCCU- -5'
24674 3' -57.9 NC_005264.1 + 13451 0.72 0.504248
Target:  5'- --cGCGGCGGcgccgaAGGGGCUCCuGCGgGGAc -3'
miRNA:   3'- ugaUGCCGUC------UCCUUGAGG-CGCgCCU- -5'
24674 3' -57.9 NC_005264.1 + 113407 0.72 0.504248
Target:  5'- uGCgcgACGGCAGA-GAGCUCCauGUGCGGc -3'
miRNA:   3'- -UGa--UGCCGUCUcCUUGAGG--CGCGCCu -5'
24674 3' -57.9 NC_005264.1 + 3797 0.71 0.572428
Target:  5'- aACUggGCGGUuguugcgaGGAGGuGCUCCcugcGCGCGGAg -3'
miRNA:   3'- -UGA--UGCCG--------UCUCCuUGAGG----CGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 76674 0.71 0.572428
Target:  5'- -gUGCGGCAGAaGAuaccucugcccaGCUUgGCGCGGAg -3'
miRNA:   3'- ugAUGCCGUCUcCU------------UGAGgCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 107309 0.71 0.59236
Target:  5'- uGCUACcuaGGCuuGAGGGGCUUCuuGCGUGGAg -3'
miRNA:   3'- -UGAUG---CCGu-CUCCUUGAGG--CGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 160656 0.7 0.602371
Target:  5'- gGCgcCGGCaauGGAGGGGCaacgCCGCGgGGAu -3'
miRNA:   3'- -UGauGCCG---UCUCCUUGa---GGCGCgCCU- -5'
24674 3' -57.9 NC_005264.1 + 43838 0.7 0.612404
Target:  5'- cCUGCGGUuauaaAGAagGGGGCUgCCGCGgGGAa -3'
miRNA:   3'- uGAUGCCG-----UCU--CCUUGA-GGCGCgCCU- -5'
24674 3' -57.9 NC_005264.1 + 46609 0.7 0.622451
Target:  5'- cCUGCGGgGcGAGGAcgGCUCCGUGCa-- -3'
miRNA:   3'- uGAUGCCgU-CUCCU--UGAGGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 13289 0.7 0.629488
Target:  5'- aGCgagGCGGgucguggagcucccCGGAGGAcggCCGCGCGGAg -3'
miRNA:   3'- -UGa--UGCC--------------GUCUCCUugaGGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 132316 0.7 0.629488
Target:  5'- aGCgagGCGGgucguggagcucccCGGAGGAcggCCGCGCGGAg -3'
miRNA:   3'- -UGa--UGCC--------------GUCUCCUugaGGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 46579 0.7 0.642558
Target:  5'- uCUGCGGCGGGguaacGGAugUCaCG-GCGGAg -3'
miRNA:   3'- uGAUGCCGUCU-----CCUugAG-GCgCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.