miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 3' -57.9 NC_005264.1 + 33884 0.7 0.652604
Target:  5'- cGCUcgagGCGGCGGuGGAACUCCuagaagacauG-GCGGAg -3'
miRNA:   3'- -UGA----UGCCGUCuCCUUGAGG----------CgCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 25715 0.7 0.652604
Target:  5'- gGCgcggGCGGCAGcGGugcguACUCgGuCGCGGAg -3'
miRNA:   3'- -UGa---UGCCGUCuCCu----UGAGgC-GCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 29259 0.69 0.662634
Target:  5'- gACUGCGGCGcgcagauuGuuGGACUgUGCGCGGGc -3'
miRNA:   3'- -UGAUGCCGU--------CucCUUGAgGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 64535 0.69 0.662634
Target:  5'- cGCcGCGG-AGGGGggUUCCGCGauaaCGGAc -3'
miRNA:   3'- -UGaUGCCgUCUCCuuGAGGCGC----GCCU- -5'
24674 3' -57.9 NC_005264.1 + 86892 0.69 0.682614
Target:  5'- ---cCGGUAGAGcGGACUuuGCGUGGc -3'
miRNA:   3'- ugauGCCGUCUC-CUUGAggCGCGCCu -5'
24674 3' -57.9 NC_005264.1 + 119798 0.69 0.682614
Target:  5'- gACaguCGGCGGGGGAauggucGCUUCGC-CGGAa -3'
miRNA:   3'- -UGau-GCCGUCUCCU------UGAGGCGcGCCU- -5'
24674 3' -57.9 NC_005264.1 + 75095 0.69 0.684604
Target:  5'- cGCUGCGGCAGGcgccggcgccgagcuGGGGCgcagucaaauggCCGCGCGu- -3'
miRNA:   3'- -UGAUGCCGUCU---------------CCUUGa-----------GGCGCGCcu -5'
24674 3' -57.9 NC_005264.1 + 150711 0.69 0.692548
Target:  5'- aGCgcCGGCGGAGGAAUcgucaguuuuUCuCGCGgGGGu -3'
miRNA:   3'- -UGauGCCGUCUCCUUG----------AG-GCGCgCCU- -5'
24674 3' -57.9 NC_005264.1 + 23557 0.69 0.702434
Target:  5'- cGCUACcGCGGAugGGAGCUa-GUGCGGAu -3'
miRNA:   3'- -UGAUGcCGUCU--CCUUGAggCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 983 0.68 0.722025
Target:  5'- --gGCGGCAGGuGGGcCUCCcccuCGCGGAc -3'
miRNA:   3'- ugaUGCCGUCU-CCUuGAGGc---GCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 140552 0.68 0.722025
Target:  5'- gGCUgggAUGGCAGAaGGGCg-CGCGCGGGu -3'
miRNA:   3'- -UGA---UGCCGUCUcCUUGagGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 116420 0.68 0.741318
Target:  5'- --cGCGGCAGgucgcuGGGGGCgucuggCCGCGgGGGc -3'
miRNA:   3'- ugaUGCCGUC------UCCUUGa-----GGCGCgCCU- -5'
24674 3' -57.9 NC_005264.1 + 3415 0.68 0.750831
Target:  5'- --cGCGGgGGAGGGACguagggCCGCGCc-- -3'
miRNA:   3'- ugaUGCCgUCUCCUUGa-----GGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 122442 0.68 0.750831
Target:  5'- --cGCGGgGGAGGGACguagggCCGCGCc-- -3'
miRNA:   3'- ugaUGCCgUCUCCUUGa-----GGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 122974 0.68 0.750831
Target:  5'- --aAgGGUAGAGGAACguccuggCCGCGcCGGc -3'
miRNA:   3'- ugaUgCCGUCUCCUUGa------GGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 3948 0.68 0.750831
Target:  5'- --aAgGGUAGAGGAACguccuggCCGCGcCGGc -3'
miRNA:   3'- ugaUgCCGUCUCCUUGa------GGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 125566 0.68 0.760242
Target:  5'- --gGCGGCAG-GGGGCUUCG-GCaGGAg -3'
miRNA:   3'- ugaUGCCGUCuCCUUGAGGCgCG-CCU- -5'
24674 3' -57.9 NC_005264.1 + 6539 0.68 0.760242
Target:  5'- --gGCGGCAG-GGGGCUUCG-GCaGGAg -3'
miRNA:   3'- ugaUGCCGUCuCCUUGAGGCgCG-CCU- -5'
24674 3' -57.9 NC_005264.1 + 128978 0.68 0.76862
Target:  5'- gACgcCGGC-GAGGGACUgccggacCCGUGCGGc -3'
miRNA:   3'- -UGauGCCGuCUCCUUGA-------GGCGCGCCu -5'
24674 3' -57.9 NC_005264.1 + 124377 0.68 0.769545
Target:  5'- --cGCGGCAGcau-GCUaCCGUGCGGAa -3'
miRNA:   3'- ugaUGCCGUCuccuUGA-GGCGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.