miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 3' -57.9 NC_005264.1 + 117100 0.67 0.787787
Target:  5'- cCUAUGGCAGuuuucGGAGCcgUCGaUGCGGAg -3'
miRNA:   3'- uGAUGCCGUCu----CCUUGa-GGC-GCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 71857 0.67 0.787787
Target:  5'- --cGCGGCGGcGGugUUCCGCGaCGGc -3'
miRNA:   3'- ugaUGCCGUCuCCuuGAGGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 24314 0.67 0.785084
Target:  5'- gGCUACGcGCAGAGaGAGCguuUCuucgcgagugaaauCGCGCGGc -3'
miRNA:   3'- -UGAUGC-CGUCUC-CUUG---AG--------------GCGCGCCu -5'
24674 3' -57.9 NC_005264.1 + 110210 0.67 0.778729
Target:  5'- --aACGGCAGGGGcGGCa-CGgGCGGAg -3'
miRNA:   3'- ugaUGCCGUCUCC-UUGagGCgCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 132112 0.67 0.777816
Target:  5'- cCUugGGCuccGAGG-AUUCCgaacggaGCGCGGAc -3'
miRNA:   3'- uGAugCCGu--CUCCuUGAGG-------CGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 13085 0.67 0.777816
Target:  5'- cCUugGGCuccGAGG-AUUCCgaacggaGCGCGGAc -3'
miRNA:   3'- uGAugCCGu--CUCCuUGAGG-------CGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 69869 0.68 0.769545
Target:  5'- cCUACGGCGGAcGcGCUUCGCGCc-- -3'
miRNA:   3'- uGAUGCCGUCUcCuUGAGGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 120009 0.68 0.769545
Target:  5'- --gGCGGCAGGuGGGcCUCCccccuCGCGGAc -3'
miRNA:   3'- ugaUGCCGUCU-CCUuGAGGc----GCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 25627 0.68 0.769545
Target:  5'- cACgGCGGCGGuGGGgccgcGCUCCGCGUu-- -3'
miRNA:   3'- -UGaUGCCGUCuCCU-----UGAGGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 124377 0.68 0.769545
Target:  5'- --cGCGGCAGcau-GCUaCCGUGCGGAa -3'
miRNA:   3'- ugaUGCCGUCuccuUGA-GGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 128978 0.68 0.76862
Target:  5'- gACgcCGGC-GAGGGACUgccggacCCGUGCGGc -3'
miRNA:   3'- -UGauGCCGuCUCCUUGA-------GGCGCGCCu -5'
24674 3' -57.9 NC_005264.1 + 125566 0.68 0.760242
Target:  5'- --gGCGGCAG-GGGGCUUCG-GCaGGAg -3'
miRNA:   3'- ugaUGCCGUCuCCUUGAGGCgCG-CCU- -5'
24674 3' -57.9 NC_005264.1 + 6539 0.68 0.760242
Target:  5'- --gGCGGCAG-GGGGCUUCG-GCaGGAg -3'
miRNA:   3'- ugaUGCCGUCuCCUUGAGGCgCG-CCU- -5'
24674 3' -57.9 NC_005264.1 + 3415 0.68 0.750831
Target:  5'- --cGCGGgGGAGGGACguagggCCGCGCc-- -3'
miRNA:   3'- ugaUGCCgUCUCCUUGa-----GGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 3948 0.68 0.750831
Target:  5'- --aAgGGUAGAGGAACguccuggCCGCGcCGGc -3'
miRNA:   3'- ugaUgCCGUCUCCUUGa------GGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 122442 0.68 0.750831
Target:  5'- --cGCGGgGGAGGGACguagggCCGCGCc-- -3'
miRNA:   3'- ugaUGCCgUCUCCUUGa-----GGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 122974 0.68 0.750831
Target:  5'- --aAgGGUAGAGGAACguccuggCCGCGcCGGc -3'
miRNA:   3'- ugaUgCCGUCUCCUUGa------GGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 116420 0.68 0.741318
Target:  5'- --cGCGGCAGgucgcuGGGGGCgucuggCCGCGgGGGc -3'
miRNA:   3'- ugaUGCCGUC------UCCUUGa-----GGCGCgCCU- -5'
24674 3' -57.9 NC_005264.1 + 983 0.68 0.722025
Target:  5'- --gGCGGCAGGuGGGcCUCCcccuCGCGGAc -3'
miRNA:   3'- ugaUGCCGUCU-CCUuGAGGc---GCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 140552 0.68 0.722025
Target:  5'- gGCUgggAUGGCAGAaGGGCg-CGCGCGGGu -3'
miRNA:   3'- -UGA---UGCCGUCUcCUUGagGCGCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.