miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 3' -57.9 NC_005264.1 + 46609 0.7 0.622451
Target:  5'- cCUGCGGgGcGAGGAcgGCUCCGUGCa-- -3'
miRNA:   3'- uGAUGCCgU-CUCCU--UGAGGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 47307 0.66 0.862274
Target:  5'- --gAUGGCAGcgGGGAACUgcCCGCGUcGAg -3'
miRNA:   3'- ugaUGCCGUC--UCCUUGA--GGCGCGcCU- -5'
24674 3' -57.9 NC_005264.1 + 55212 0.67 0.814116
Target:  5'- cUUGCGGCuauGGuGGAACacgCCGCugaaGCGGAa -3'
miRNA:   3'- uGAUGCCG---UCuCCUUGa--GGCG----CGCCU- -5'
24674 3' -57.9 NC_005264.1 + 60838 0.73 0.44874
Target:  5'- -gUACGGUAGGGGAaagcaGCUUCG-GCGGAg -3'
miRNA:   3'- ugAUGCCGUCUCCU-----UGAGGCgCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 64535 0.69 0.662634
Target:  5'- cGCcGCGG-AGGGGggUUCCGCGauaaCGGAc -3'
miRNA:   3'- -UGaUGCCgUCUCCuuGAGGCGC----GCCU- -5'
24674 3' -57.9 NC_005264.1 + 69869 0.68 0.769545
Target:  5'- cCUACGGCGGAcGcGCUUCGCGCc-- -3'
miRNA:   3'- uGAUGCCGUCUcCuUGAGGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 71857 0.67 0.787787
Target:  5'- --cGCGGCGGcGGugUUCCGCGaCGGc -3'
miRNA:   3'- ugaUGCCGUCuCCuuGAGGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 75095 0.69 0.684604
Target:  5'- cGCUGCGGCAGGcgccggcgccgagcuGGGGCgcagucaaauggCCGCGCGu- -3'
miRNA:   3'- -UGAUGCCGUCU---------------CCUUGa-----------GGCGCGCcu -5'
24674 3' -57.9 NC_005264.1 + 75212 0.66 0.846955
Target:  5'- --gACGuGCAGAGGGuuugcCUCUGgCGCGGc -3'
miRNA:   3'- ugaUGC-CGUCUCCUu----GAGGC-GCGCCu -5'
24674 3' -57.9 NC_005264.1 + 76674 0.71 0.572428
Target:  5'- -gUGCGGCAGAaGAuaccucugcccaGCUUgGCGCGGAg -3'
miRNA:   3'- ugAUGCCGUCUcCU------------UGAGgCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 78024 0.66 0.846955
Target:  5'- --gACGGC-GAGGcuucGCUCCGUGCGc- -3'
miRNA:   3'- ugaUGCCGuCUCCu---UGAGGCGCGCcu -5'
24674 3' -57.9 NC_005264.1 + 82059 0.75 0.348851
Target:  5'- gGCUACGGcCAGGccaGAuCUCUGCGCGGAg -3'
miRNA:   3'- -UGAUGCC-GUCUc--CUuGAGGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 86892 0.69 0.682614
Target:  5'- ---cCGGUAGAGcGGACUuuGCGUGGc -3'
miRNA:   3'- ugauGCCGUCUC-CUUGAggCGCGCCu -5'
24674 3' -57.9 NC_005264.1 + 91441 0.74 0.422279
Target:  5'- --cAUGGCccuAGAGGcgaugacGCUCCGCGCGGAu -3'
miRNA:   3'- ugaUGCCG---UCUCCu------UGAGGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 91561 0.66 0.830884
Target:  5'- --cGCGGCGGGGGGcacgagGCUUguCGCGGAg -3'
miRNA:   3'- ugaUGCCGUCUCCU------UGAGgcGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 92732 0.67 0.804617
Target:  5'- --cGCGGCAGcucgauaAGGucCUCCGCGCcGAc -3'
miRNA:   3'- ugaUGCCGUC-------UCCuuGAGGCGCGcCU- -5'
24674 3' -57.9 NC_005264.1 + 106666 1.08 0.002254
Target:  5'- gACUACGGCAGAGGAACUCCGCGCGGAg -3'
miRNA:   3'- -UGAUGCCGUCUCCUUGAGGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 107026 0.67 0.822583
Target:  5'- cACcGCGGCGauGuGGAAUUuuGgGCGGAa -3'
miRNA:   3'- -UGaUGCCGU--CuCCUUGAggCgCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 107309 0.71 0.59236
Target:  5'- uGCUACcuaGGCuuGAGGGGCUUCuuGCGUGGAg -3'
miRNA:   3'- -UGAUG---CCGu-CUCCUUGAGG--CGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 109365 0.66 0.862274
Target:  5'- uCUAUGGUGGGGGAGUUCgGcCGuCGGAa -3'
miRNA:   3'- uGAUGCCGUCUCCUUGAGgC-GC-GCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.