Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24674 | 3' | -57.9 | NC_005264.1 | + | 160656 | 0.7 | 0.602371 |
Target: 5'- gGCgcCGGCaauGGAGGGGCaacgCCGCGgGGAu -3' miRNA: 3'- -UGauGCCG---UCUCCUUGa---GGCGCgCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 155235 | 0.81 | 0.167951 |
Target: 5'- uGCUGCGGCGGGGGAugaggaagcauCUCCGCaGCGGc -3' miRNA: 3'- -UGAUGCCGUCUCCUu----------GAGGCG-CGCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 150711 | 0.69 | 0.692548 |
Target: 5'- aGCgcCGGCGGAGGAAUcgucaguuuuUCuCGCGgGGGu -3' miRNA: 3'- -UGauGCCGUCUCCUUG----------AG-GCGCgCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 149452 | 0.78 | 0.247191 |
Target: 5'- aGCUGCGGCGGAGGAGgUCuCGggggagcCGCGGGc -3' miRNA: 3'- -UGAUGCCGUCUCCUUgAG-GC-------GCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 147472 | 0.66 | 0.862274 |
Target: 5'- cACUGCGGCAccGGGGCUagUGUGUGGc -3' miRNA: 3'- -UGAUGCCGUcuCCUUGAg-GCGCGCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 146746 | 0.66 | 0.862274 |
Target: 5'- aACgaggGCGGCGGAcccGGcAACagcaagcgCCGCGCGGc -3' miRNA: 3'- -UGa---UGCCGUCU---CC-UUGa-------GGCGCGCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 146616 | 0.73 | 0.439817 |
Target: 5'- aACUgAUGGCAGAGGGGucguCUCCGCGUGu- -3' miRNA: 3'- -UGA-UGCCGUCUCCUU----GAGGCGCGCcu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 140552 | 0.68 | 0.722025 |
Target: 5'- gGCUgggAUGGCAGAaGGGCg-CGCGCGGGu -3' miRNA: 3'- -UGA---UGCCGUCUcCUUGagGCGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 134107 | 0.67 | 0.822583 |
Target: 5'- gGCgcaGGCuGAGacuaguGCUUCGCGCGGAu -3' miRNA: 3'- -UGaugCCGuCUCcu----UGAGGCGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 132519 | 0.67 | 0.822583 |
Target: 5'- aGCU-CGGgAGAGGucGACuUCCGCGaCGGc -3' miRNA: 3'- -UGAuGCCgUCUCC--UUG-AGGCGC-GCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 132478 | 0.72 | 0.504248 |
Target: 5'- --cGCGGCGGcgccgaAGGGGCUCCuGCGgGGAc -3' miRNA: 3'- ugaUGCCGUC------UCCUUGAGG-CGCgCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 132316 | 0.7 | 0.629488 |
Target: 5'- aGCgagGCGGgucguggagcucccCGGAGGAcggCCGCGCGGAg -3' miRNA: 3'- -UGa--UGCC--------------GUCUCCUugaGGCGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 132112 | 0.67 | 0.777816 |
Target: 5'- cCUugGGCuccGAGG-AUUCCgaacggaGCGCGGAc -3' miRNA: 3'- uGAugCCGu--CUCCuUGAGG-------CGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 128978 | 0.68 | 0.76862 |
Target: 5'- gACgcCGGC-GAGGGACUgccggacCCGUGCGGc -3' miRNA: 3'- -UGauGCCGuCUCCUUGA-------GGCGCGCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 125566 | 0.68 | 0.760242 |
Target: 5'- --gGCGGCAG-GGGGCUUCG-GCaGGAg -3' miRNA: 3'- ugaUGCCGUCuCCUUGAGGCgCG-CCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 124377 | 0.68 | 0.769545 |
Target: 5'- --cGCGGCAGcau-GCUaCCGUGCGGAa -3' miRNA: 3'- ugaUGCCGUCuccuUGA-GGCGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 123973 | 0.67 | 0.814116 |
Target: 5'- --gGCGGUGuacacccgcGAGGAGCUCCGCGaCGu- -3' miRNA: 3'- ugaUGCCGU---------CUCCUUGAGGCGC-GCcu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 122974 | 0.68 | 0.750831 |
Target: 5'- --aAgGGUAGAGGAACguccuggCCGCGcCGGc -3' miRNA: 3'- ugaUgCCGUCUCCUUGa------GGCGC-GCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 122442 | 0.68 | 0.750831 |
Target: 5'- --cGCGGgGGAGGGACguagggCCGCGCc-- -3' miRNA: 3'- ugaUGCCgUCUCCUUGa-----GGCGCGccu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 122407 | 0.67 | 0.796709 |
Target: 5'- --gGCGGC-GAGGGcuuCUCCGgaaCGCGGGg -3' miRNA: 3'- ugaUGCCGuCUCCUu--GAGGC---GCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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