Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24674 | 3' | -57.9 | NC_005264.1 | + | 106666 | 1.08 | 0.002254 |
Target: 5'- gACUACGGCAGAGGAACUCCGCGCGGAg -3' miRNA: 3'- -UGAUGCCGUCUCCUUGAGGCGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 125566 | 0.68 | 0.760242 |
Target: 5'- --gGCGGCAG-GGGGCUUCG-GCaGGAg -3' miRNA: 3'- ugaUGCCGUCuCCUUGAGGCgCG-CCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 69869 | 0.68 | 0.769545 |
Target: 5'- cCUACGGCGGAcGcGCUUCGCGCc-- -3' miRNA: 3'- uGAUGCCGUCUcCuUGAGGCGCGccu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 146746 | 0.66 | 0.862274 |
Target: 5'- aACgaggGCGGCGGAcccGGcAACagcaagcgCCGCGCGGc -3' miRNA: 3'- -UGa---UGCCGUCU---CC-UUGa-------GGCGCGCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 132478 | 0.72 | 0.504248 |
Target: 5'- --cGCGGCGGcgccgaAGGGGCUCCuGCGgGGAc -3' miRNA: 3'- ugaUGCCGUC------UCCUUGAGG-CGCgCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 3797 | 0.71 | 0.572428 |
Target: 5'- aACUggGCGGUuguugcgaGGAGGuGCUCCcugcGCGCGGAg -3' miRNA: 3'- -UGA--UGCCG--------UCUCCuUGAGG----CGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 107309 | 0.71 | 0.59236 |
Target: 5'- uGCUACcuaGGCuuGAGGGGCUUCuuGCGUGGAg -3' miRNA: 3'- -UGAUG---CCGu-CUCCUUGAGG--CGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 46609 | 0.7 | 0.622451 |
Target: 5'- cCUGCGGgGcGAGGAcgGCUCCGUGCa-- -3' miRNA: 3'- uGAUGCCgU-CUCCU--UGAGGCGCGccu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 33884 | 0.7 | 0.652604 |
Target: 5'- cGCUcgagGCGGCGGuGGAACUCCuagaagacauG-GCGGAg -3' miRNA: 3'- -UGA----UGCCGUCuCCUUGAGG----------CgCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 122974 | 0.68 | 0.750831 |
Target: 5'- --aAgGGUAGAGGAACguccuggCCGCGcCGGc -3' miRNA: 3'- ugaUgCCGUCUCCUUGa------GGCGC-GCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 75095 | 0.69 | 0.684604 |
Target: 5'- cGCUGCGGCAGGcgccggcgccgagcuGGGGCgcagucaaauggCCGCGCGu- -3' miRNA: 3'- -UGAUGCCGUCU---------------CCUUGa-----------GGCGCGCcu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 25715 | 0.7 | 0.652604 |
Target: 5'- gGCgcggGCGGCAGcGGugcguACUCgGuCGCGGAg -3' miRNA: 3'- -UGa---UGCCGUCuCCu----UGAGgC-GCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 149452 | 0.78 | 0.247191 |
Target: 5'- aGCUGCGGCGGAGGAGgUCuCGggggagcCGCGGGc -3' miRNA: 3'- -UGAUGCCGUCUCCUUgAG-GC-------GCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 116420 | 0.68 | 0.741318 |
Target: 5'- --cGCGGCAGgucgcuGGGGGCgucuggCCGCGgGGGc -3' miRNA: 3'- ugaUGCCGUC------UCCUUGa-----GGCGCgCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 91441 | 0.74 | 0.422279 |
Target: 5'- --cAUGGCccuAGAGGcgaugacGCUCCGCGCGGAu -3' miRNA: 3'- ugaUGCCG---UCUCCu------UGAGGCGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 132316 | 0.7 | 0.629488 |
Target: 5'- aGCgagGCGGgucguggagcucccCGGAGGAcggCCGCGCGGAg -3' miRNA: 3'- -UGa--UGCC--------------GUCUCCUugaGGCGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 122442 | 0.68 | 0.750831 |
Target: 5'- --cGCGGgGGAGGGACguagggCCGCGCc-- -3' miRNA: 3'- ugaUGCCgUCUCCUUGa-----GGCGCGccu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 128978 | 0.68 | 0.76862 |
Target: 5'- gACgcCGGC-GAGGGACUgccggacCCGUGCGGc -3' miRNA: 3'- -UGauGCCGuCUCCUUGA-------GGCGCGCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 146616 | 0.73 | 0.439817 |
Target: 5'- aACUgAUGGCAGAGGGGucguCUCCGCGUGu- -3' miRNA: 3'- -UGA-UGCCGUCUCCUU----GAGGCGCGCcu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 76674 | 0.71 | 0.572428 |
Target: 5'- -gUGCGGCAGAaGAuaccucugcccaGCUUgGCGCGGAg -3' miRNA: 3'- ugAUGCCGUCUcCU------------UGAGgCGCGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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