miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 3' -57.9 NC_005264.1 + 122974 0.68 0.750831
Target:  5'- --aAgGGUAGAGGAACguccuggCCGCGcCGGc -3'
miRNA:   3'- ugaUgCCGUCUCCUUGa------GGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 132316 0.7 0.629488
Target:  5'- aGCgagGCGGgucguggagcucccCGGAGGAcggCCGCGCGGAg -3'
miRNA:   3'- -UGa--UGCC--------------GUCUCCUugaGGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 132519 0.67 0.822583
Target:  5'- aGCU-CGGgAGAGGucGACuUCCGCGaCGGc -3'
miRNA:   3'- -UGAuGCCgUCUCC--UUG-AGGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 69869 0.68 0.769545
Target:  5'- cCUACGGCGGAcGcGCUUCGCGCc-- -3'
miRNA:   3'- uGAUGCCGUCUcCuUGAGGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 46609 0.7 0.622451
Target:  5'- cCUGCGGgGcGAGGAcgGCUCCGUGCa-- -3'
miRNA:   3'- uGAUGCCgU-CUCCU--UGAGGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 110833 0.67 0.822583
Target:  5'- uCUGa-GCGGGGucGCUCCGCGCGcGAc -3'
miRNA:   3'- uGAUgcCGUCUCcuUGAGGCGCGC-CU- -5'
24674 3' -57.9 NC_005264.1 + 107309 0.71 0.59236
Target:  5'- uGCUACcuaGGCuuGAGGGGCUUCuuGCGUGGAg -3'
miRNA:   3'- -UGAUG---CCGu-CUCCUUGAGG--CGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 76674 0.71 0.572428
Target:  5'- -gUGCGGCAGAaGAuaccucugcccaGCUUgGCGCGGAg -3'
miRNA:   3'- ugAUGCCGUCUcCU------------UGAGgCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 120009 0.68 0.769545
Target:  5'- --gGCGGCAGGuGGGcCUCCccccuCGCGGAc -3'
miRNA:   3'- ugaUGCCGUCU-CCUuGAGGc----GCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 121893 0.66 0.854712
Target:  5'- cGCUGCGGCugcGAucgaccGGGGCgCgGCGCGGc -3'
miRNA:   3'- -UGAUGCCGu--CU------CCUUGaGgCGCGCCu -5'
24674 3' -57.9 NC_005264.1 + 75095 0.69 0.684604
Target:  5'- cGCUGCGGCAGGcgccggcgccgagcuGGGGCgcagucaaauggCCGCGCGu- -3'
miRNA:   3'- -UGAUGCCGUCU---------------CCUUGa-----------GGCGCGCcu -5'
24674 3' -57.9 NC_005264.1 + 25715 0.7 0.652604
Target:  5'- gGCgcggGCGGCAGcGGugcguACUCgGuCGCGGAg -3'
miRNA:   3'- -UGa---UGCCGUCuCCu----UGAGgC-GCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 71857 0.67 0.787787
Target:  5'- --cGCGGCGGcGGugUUCCGCGaCGGc -3'
miRNA:   3'- ugaUGCCGUCuCCuuGAGGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 107026 0.67 0.822583
Target:  5'- cACcGCGGCGauGuGGAAUUuuGgGCGGAa -3'
miRNA:   3'- -UGaUGCCGU--CuCCUUGAggCgCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 124377 0.68 0.769545
Target:  5'- --cGCGGCAGcau-GCUaCCGUGCGGAa -3'
miRNA:   3'- ugaUGCCGUCuccuUGA-GGCGCGCCU- -5'
24674 3' -57.9 NC_005264.1 + 25627 0.68 0.769545
Target:  5'- cACgGCGGCGGuGGGgccgcGCUCCGCGUu-- -3'
miRNA:   3'- -UGaUGCCGUCuCCU-----UGAGGCGCGccu -5'
24674 3' -57.9 NC_005264.1 + 13451 0.72 0.504248
Target:  5'- --cGCGGCGGcgccgaAGGGGCUCCuGCGgGGAc -3'
miRNA:   3'- ugaUGCCGUC------UCCUUGAGG-CGCgCCU- -5'
24674 3' -57.9 NC_005264.1 + 13492 0.67 0.822583
Target:  5'- aGCU-CGGgAGAGGucGACuUCCGCGaCGGc -3'
miRNA:   3'- -UGAuGCCgUCUCC--UUG-AGGCGC-GCCu -5'
24674 3' -57.9 NC_005264.1 + 43838 0.7 0.612404
Target:  5'- cCUGCGGUuauaaAGAagGGGGCUgCCGCGgGGAa -3'
miRNA:   3'- uGAUGCCG-----UCU--CCUUGA-GGCGCgCCU- -5'
24674 3' -57.9 NC_005264.1 + 160656 0.7 0.602371
Target:  5'- gGCgcCGGCaauGGAGGGGCaacgCCGCGgGGAu -3'
miRNA:   3'- -UGauGCCG---UCUCCUUGa---GGCGCgCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.