Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24674 | 3' | -57.9 | NC_005264.1 | + | 23557 | 0.69 | 0.702434 |
Target: 5'- cGCUACcGCGGAugGGAGCUa-GUGCGGAu -3' miRNA: 3'- -UGAUGcCGUCU--CCUUGAggCGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 13085 | 0.67 | 0.777816 |
Target: 5'- cCUugGGCuccGAGG-AUUCCgaacggaGCGCGGAc -3' miRNA: 3'- uGAugCCGu--CUCCuUGAGG-------CGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 25627 | 0.68 | 0.769545 |
Target: 5'- cACgGCGGCGGuGGGgccgcGCUCCGCGUu-- -3' miRNA: 3'- -UGaUGCCGUCuCCU-----UGAGGCGCGccu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 124377 | 0.68 | 0.769545 |
Target: 5'- --cGCGGCAGcau-GCUaCCGUGCGGAa -3' miRNA: 3'- ugaUGCCGUCuccuUGA-GGCGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 6539 | 0.68 | 0.760242 |
Target: 5'- --gGCGGCAG-GGGGCUUCG-GCaGGAg -3' miRNA: 3'- ugaUGCCGUCuCCUUGAGGCgCG-CCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 3948 | 0.68 | 0.750831 |
Target: 5'- --aAgGGUAGAGGAACguccuggCCGCGcCGGc -3' miRNA: 3'- ugaUgCCGUCUCCUUGa------GGCGC-GCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 3415 | 0.68 | 0.750831 |
Target: 5'- --cGCGGgGGAGGGACguagggCCGCGCc-- -3' miRNA: 3'- ugaUGCCgUCUCCUUGa-----GGCGCGccu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 140552 | 0.68 | 0.722025 |
Target: 5'- gGCUgggAUGGCAGAaGGGCg-CGCGCGGGu -3' miRNA: 3'- -UGA---UGCCGUCUcCUUGagGCGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 983 | 0.68 | 0.722025 |
Target: 5'- --gGCGGCAGGuGGGcCUCCcccuCGCGGAc -3' miRNA: 3'- ugaUGCCGUCU-CCUuGAGGc---GCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 110210 | 0.67 | 0.778729 |
Target: 5'- --aACGGCAGGGGcGGCa-CGgGCGGAg -3' miRNA: 3'- ugaUGCCGUCUCC-UUGagGCgCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 117100 | 0.67 | 0.787787 |
Target: 5'- cCUAUGGCAGuuuucGGAGCcgUCGaUGCGGAg -3' miRNA: 3'- uGAUGCCGUCu----CCUUGa-GGC-GCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 3380 | 0.67 | 0.796709 |
Target: 5'- --gGCGGC-GAGGGcuuCUCCGgaaCGCGGGg -3' miRNA: 3'- ugaUGCCGuCUCCUu--GAGGC---GCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 109365 | 0.66 | 0.862274 |
Target: 5'- uCUAUGGUGGGGGAGUUCgGcCGuCGGAa -3' miRNA: 3'- uGAUGCCGUCUCCUUGAGgC-GC-GCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 2867 | 0.66 | 0.854712 |
Target: 5'- cGCUGCGGCugcGAucgaccGGGGCgCgGCGCGGc -3' miRNA: 3'- -UGAUGCCGu--CU------CCUUGaGgCGCGCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 75212 | 0.66 | 0.846955 |
Target: 5'- --gACGuGCAGAGGGuuugcCUCUGgCGCGGc -3' miRNA: 3'- ugaUGC-CGUCUCCUu----GAGGC-GCGCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 91561 | 0.66 | 0.830884 |
Target: 5'- --cGCGGCGGGGGGcacgagGCUUguCGCGGAg -3' miRNA: 3'- ugaUGCCGUCUCCU------UGAGgcGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 134107 | 0.67 | 0.822583 |
Target: 5'- gGCgcaGGCuGAGacuaguGCUUCGCGCGGAu -3' miRNA: 3'- -UGaugCCGuCUCcu----UGAGGCGCGCCU- -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 13492 | 0.67 | 0.822583 |
Target: 5'- aGCU-CGGgAGAGGucGACuUCCGCGaCGGc -3' miRNA: 3'- -UGAuGCCgUCUCC--UUG-AGGCGC-GCCu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 123973 | 0.67 | 0.814116 |
Target: 5'- --gGCGGUGuacacccgcGAGGAGCUCCGCGaCGu- -3' miRNA: 3'- ugaUGCCGU---------CUCCUUGAGGCGC-GCcu -5' |
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24674 | 3' | -57.9 | NC_005264.1 | + | 55212 | 0.67 | 0.814116 |
Target: 5'- cUUGCGGCuauGGuGGAACacgCCGCugaaGCGGAa -3' miRNA: 3'- uGAUGCCG---UCuCCUUGa--GGCG----CGCCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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