miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 5' -57.7 NC_005264.1 + 100996 0.66 0.882682
Target:  5'- cGCCAacaacccguACGCGGCGCagGCGaGCCa-- -3'
miRNA:   3'- cCGGU---------UGCGCUGUGagCGCgCGGauc -5'
24674 5' -57.7 NC_005264.1 + 47093 0.66 0.882682
Target:  5'- uGGCaCGGCGagaGuauaGCGCUCGCcGCGCCc-- -3'
miRNA:   3'- -CCG-GUUGCg--C----UGUGAGCG-CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 116657 0.66 0.882682
Target:  5'- cGCCGGCGU---GCUCgGCGaucaGCCUAGa -3'
miRNA:   3'- cCGGUUGCGcugUGAG-CGCg---CGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 34969 0.66 0.882682
Target:  5'- cGG-CGACGgaGACcccAUUCGCGCGCCg-- -3'
miRNA:   3'- -CCgGUUGCg-CUG---UGAGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 109836 0.66 0.882682
Target:  5'- uGGCUAACuggcacaguuugGCG-UGCUCGCGCaccGCCUGa -3'
miRNA:   3'- -CCGGUUG------------CGCuGUGAGCGCG---CGGAUc -5'
24674 5' -57.7 NC_005264.1 + 61489 0.66 0.882682
Target:  5'- cGCCGACGCGccccGCGguCUCGgcuaGCGCCg-- -3'
miRNA:   3'- cCGGUUGCGC----UGU--GAGCg---CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 126130 0.66 0.882682
Target:  5'- cGGCUGAgcCGaUGGCACUUGCGCGgCa-- -3'
miRNA:   3'- -CCGGUU--GC-GCUGUGAGCGCGCgGauc -5'
24674 5' -57.7 NC_005264.1 + 109954 0.66 0.882682
Target:  5'- uGCCAccACGCagcccccuCGCUCGCGCGUgUGc -3'
miRNA:   3'- cCGGU--UGCGcu------GUGAGCGCGCGgAUc -5'
24674 5' -57.7 NC_005264.1 + 75697 0.66 0.881996
Target:  5'- cGCCGucuuucgGCGCGAagACUgGUGCGCCc-- -3'
miRNA:   3'- cCGGU-------UGCGCUg-UGAgCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 42018 0.66 0.881996
Target:  5'- cGGCCAcgGCGgcaguguCGACGCgcaCGCG-GCCUAu -3'
miRNA:   3'- -CCGGU--UGC-------GCUGUGa--GCGCgCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 35002 0.66 0.875729
Target:  5'- uGCCGcgaGCGGCGCUCGaagaggaGCGCUg-- -3'
miRNA:   3'- cCGGUug-CGCUGUGAGCg------CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 121523 0.66 0.875729
Target:  5'- uGGUCGGCG-GGC-CUCGCGCGaCUUc- -3'
miRNA:   3'- -CCGGUUGCgCUGuGAGCGCGC-GGAuc -5'
24674 5' -57.7 NC_005264.1 + 125172 0.66 0.875729
Target:  5'- gGGCC-GCGCGcccgucGCGCaUCGCGUGCa--- -3'
miRNA:   3'- -CCGGuUGCGC------UGUG-AGCGCGCGgauc -5'
24674 5' -57.7 NC_005264.1 + 99802 0.66 0.875729
Target:  5'- cGGCCGAgGCGAUGgUCGC-CGaCCccgGGg -3'
miRNA:   3'- -CCGGUUgCGCUGUgAGCGcGC-GGa--UC- -5'
24674 5' -57.7 NC_005264.1 + 162688 0.66 0.875729
Target:  5'- cGGUCGGCGCG-C---UGCGCGCCg-- -3'
miRNA:   3'- -CCGGUUGCGCuGugaGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 7952 0.66 0.875729
Target:  5'- cGGCCGcgGCGUcuUugUCGC-UGCCUAGa -3'
miRNA:   3'- -CCGGU--UGCGcuGugAGCGcGCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 154029 0.66 0.875729
Target:  5'- uGCCGcgaGCGGCGCUCGaagaggaGCGCUg-- -3'
miRNA:   3'- cCGGUug-CGCUGUGAGCg------CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 6145 0.66 0.875729
Target:  5'- gGGCC-GCGCGcccgucGCGCaUCGCGUGCa--- -3'
miRNA:   3'- -CCGGuUGCGC------UGUG-AGCGCGCGgauc -5'
24674 5' -57.7 NC_005264.1 + 95050 0.66 0.875729
Target:  5'- aGGCCcACGCG-UACUUGUuagacaugauGgGCCUGGc -3'
miRNA:   3'- -CCGGuUGCGCuGUGAGCG----------CgCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 2496 0.66 0.875729
Target:  5'- uGGUCGGCG-GGC-CUCGCGCGaCUUc- -3'
miRNA:   3'- -CCGGUUGCgCUGuGAGCGCGC-GGAuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.