miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 5' -57.7 NC_005264.1 + 116657 0.66 0.882682
Target:  5'- cGCCGGCGU---GCUCgGCGaucaGCCUAGa -3'
miRNA:   3'- cCGGUUGCGcugUGAG-CGCg---CGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 160271 0.66 0.853638
Target:  5'- cGGCCAcccucAUGUGACGCUUGuCG-GCCa-- -3'
miRNA:   3'- -CCGGU-----UGCGCUGUGAGC-GCgCGGauc -5'
24674 5' -57.7 NC_005264.1 + 106614 0.66 0.853638
Target:  5'- aGCC-GCGCGACGCUCGCcaGUGaUCUc- -3'
miRNA:   3'- cCGGuUGCGCUGUGAGCG--CGC-GGAuc -5'
24674 5' -57.7 NC_005264.1 + 117611 0.66 0.853638
Target:  5'- cGGCCAugccuACGCuGCGCUCG-GCGUUcaUGGg -3'
miRNA:   3'- -CCGGU-----UGCGcUGUGAGCgCGCGG--AUC- -5'
24674 5' -57.7 NC_005264.1 + 45392 0.66 0.853638
Target:  5'- aGGCgCGGCaaacgauggaggGCGGCGCccUGCGCGCCg-- -3'
miRNA:   3'- -CCG-GUUG------------CGCUGUGa-GCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 77175 0.66 0.853638
Target:  5'- aGCCAcaacguucAUGUcGCGCUCGCGgGCCa-- -3'
miRNA:   3'- cCGGU--------UGCGcUGUGAGCGCgCGGauc -5'
24674 5' -57.7 NC_005264.1 + 69662 0.66 0.853638
Target:  5'- aGGUCGggcACGCGGCGCUgGgGC-CUUGGu -3'
miRNA:   3'- -CCGGU---UGCGCUGUGAgCgCGcGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 156019 0.66 0.852871
Target:  5'- cGCCcg-GCGACGCUUGCGCgguggacGCCUc- -3'
miRNA:   3'- cCGGuugCGCUGUGAGCGCG-------CGGAuc -5'
24674 5' -57.7 NC_005264.1 + 109896 0.66 0.845883
Target:  5'- cGGCgCAAUGCGcCGCggGCGCgGCCa-- -3'
miRNA:   3'- -CCG-GUUGCGCuGUGagCGCG-CGGauc -5'
24674 5' -57.7 NC_005264.1 + 99919 0.66 0.861202
Target:  5'- cGGCCGcgcaagcccGCGCGGCuaagcugguggACUCGUGCcaacgugaCCUAGa -3'
miRNA:   3'- -CCGGU---------UGCGCUG-----------UGAGCGCGc-------GGAUC- -5'
24674 5' -57.7 NC_005264.1 + 58478 0.66 0.861202
Target:  5'- uGCC-GCGCGACAUUaacgcaUGCGCGCaagAGc -3'
miRNA:   3'- cCGGuUGCGCUGUGA------GCGCGCGga-UC- -5'
24674 5' -57.7 NC_005264.1 + 147078 0.66 0.861202
Target:  5'- cGCCcggaGCcACGCUCGCGCGCa--- -3'
miRNA:   3'- cCGGuug-CGcUGUGAGCGCGCGgauc -5'
24674 5' -57.7 NC_005264.1 + 126130 0.66 0.882682
Target:  5'- cGGCUGAgcCGaUGGCACUUGCGCGgCa-- -3'
miRNA:   3'- -CCGGUU--GC-GCUGUGAGCGCGCgGauc -5'
24674 5' -57.7 NC_005264.1 + 99802 0.66 0.875729
Target:  5'- cGGCCGAgGCGAUGgUCGC-CGaCCccgGGg -3'
miRNA:   3'- -CCGGUUgCGCUGUgAGCGcGC-GGa--UC- -5'
24674 5' -57.7 NC_005264.1 + 43662 0.66 0.875729
Target:  5'- cGGUCGGCGCG-C---UGCGCGCCg-- -3'
miRNA:   3'- -CCGGUUGCGCuGugaGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 6145 0.66 0.875729
Target:  5'- gGGCC-GCGCGcccgucGCGCaUCGCGUGCa--- -3'
miRNA:   3'- -CCGGuUGCGC------UGUG-AGCGCGCGgauc -5'
24674 5' -57.7 NC_005264.1 + 95050 0.66 0.875729
Target:  5'- aGGCCcACGCG-UACUUGUuagacaugauGgGCCUGGc -3'
miRNA:   3'- -CCGGuUGCGCuGUGAGCG----------CgCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 35002 0.66 0.875729
Target:  5'- uGCCGcgaGCGGCGCUCGaagaggaGCGCUg-- -3'
miRNA:   3'- cCGGUug-CGCUGUGAGCg------CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 2496 0.66 0.875729
Target:  5'- uGGUCGGCG-GGC-CUCGCGCGaCUUc- -3'
miRNA:   3'- -CCGGUUGCgCUGuGAGCGCGC-GGAuc -5'
24674 5' -57.7 NC_005264.1 + 96241 0.66 0.868567
Target:  5'- cGG-CAACGCGGCGCagcccaGCGagaGCCUGu -3'
miRNA:   3'- -CCgGUUGCGCUGUGag----CGCg--CGGAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.