miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 5' -57.7 NC_005264.1 + 106704 1.1 0.0019
Target:  5'- cGGCCAACGCGACACUCGCGCGCCUAGu -3'
miRNA:   3'- -CCGGUUGCGCUGUGAGCGCGCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 60906 0.77 0.279054
Target:  5'- gGGCCGACGCcGCcaguUUCGCGCGCCa-- -3'
miRNA:   3'- -CCGGUUGCGcUGu---GAGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 27656 0.76 0.341692
Target:  5'- uGGCC-ACGCGGCGCUCGgaccgagguaCGCGgCUGGc -3'
miRNA:   3'- -CCGGuUGCGCUGUGAGC----------GCGCgGAUC- -5'
24674 5' -57.7 NC_005264.1 + 30237 0.75 0.372622
Target:  5'- cGGCCAGCGCGGCAaa-GCgGUGCCa-- -3'
miRNA:   3'- -CCGGUUGCGCUGUgagCG-CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 62642 0.75 0.380646
Target:  5'- cGCCGuccaagcgcagcACGCGACcgaACUCguugGCGCGCCUGGa -3'
miRNA:   3'- cCGGU------------UGCGCUG---UGAG----CGCGCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 81685 0.75 0.380646
Target:  5'- uGGCCGugGUGAUcagCGCGUGCCUGu -3'
miRNA:   3'- -CCGGUugCGCUGugaGCGCGCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 154907 0.75 0.397037
Target:  5'- cGGCCGugGaCGACGCguggacgCGCGCGUugCUAGc -3'
miRNA:   3'- -CCGGUugC-GCUGUGa------GCGCGCG--GAUC- -5'
24674 5' -57.7 NC_005264.1 + 112270 0.75 0.397037
Target:  5'- cGCCGcguGCGCuucccGCACgCGCGCGCCUAGc -3'
miRNA:   3'- cCGGU---UGCGc----UGUGaGCGCGCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 6234 0.74 0.431145
Target:  5'- cGGCCGcCGCGAgACUUGC-CGCCUc- -3'
miRNA:   3'- -CCGGUuGCGCUgUGAGCGcGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 125261 0.74 0.431145
Target:  5'- cGGCCGcCGCGAgACUUGC-CGCCUc- -3'
miRNA:   3'- -CCGGUuGCGCUgUGAGCGcGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 159203 0.74 0.448831
Target:  5'- cGGCCAuCGCGACGaaugUCaGCGCGCCc-- -3'
miRNA:   3'- -CCGGUuGCGCUGUg---AG-CGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 40176 0.74 0.448831
Target:  5'- cGGCCAuCGCGACGaaugUCaGCGCGCCc-- -3'
miRNA:   3'- -CCGGUuGCGCUGUg---AG-CGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 157946 0.74 0.457822
Target:  5'- cGGCCAGCGUGGCcucgaACUcCGCGUGUCg-- -3'
miRNA:   3'- -CCGGUUGCGCUG-----UGA-GCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 135003 0.74 0.457822
Target:  5'- uGCCGcCGCGACAgUgGCGCGaUCUAGg -3'
miRNA:   3'- cCGGUuGCGCUGUgAgCGCGC-GGAUC- -5'
24674 5' -57.7 NC_005264.1 + 58118 0.73 0.46691
Target:  5'- cGGCgCugcuGCGCGAC-CUCGCGCaGCCg-- -3'
miRNA:   3'- -CCG-Gu---UGCGCUGuGAGCGCG-CGGauc -5'
24674 5' -57.7 NC_005264.1 + 132712 0.73 0.46691
Target:  5'- cGGCCAAUGCGccGCAgCUCGgucCGCGCCg-- -3'
miRNA:   3'- -CCGGUUGCGC--UGU-GAGC---GCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 119167 0.73 0.476089
Target:  5'- cGGCCGccuuaACGcCGGCGCgcaGCGCGCCg-- -3'
miRNA:   3'- -CCGGU-----UGC-GCUGUGag-CGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 155787 0.73 0.476089
Target:  5'- cGGCCGGCGcCGucgcCGCUUGCGCGCa--- -3'
miRNA:   3'- -CCGGUUGC-GCu---GUGAGCGCGCGgauc -5'
24674 5' -57.7 NC_005264.1 + 140 0.73 0.476089
Target:  5'- cGGCCGccuuaACGcCGGCGCgcaGCGCGCCg-- -3'
miRNA:   3'- -CCGGU-----UGC-GCUGUGag-CGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 36761 0.73 0.476089
Target:  5'- cGGCCGGCGcCGucgcCGCUUGCGCGCa--- -3'
miRNA:   3'- -CCGGUUGC-GCu---GUGAGCGCGCGgauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.