miRNA display CGI


Results 21 - 40 of 196 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 5' -57.7 NC_005264.1 + 37633 0.73 0.485357
Target:  5'- cGGCCAugGCGAC-Cg-GCGUGCCc-- -3'
miRNA:   3'- -CCGGUugCGCUGuGagCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 152667 0.73 0.485357
Target:  5'- uGCCGACGacaaGAUACUCGCcGagGCCUGGa -3'
miRNA:   3'- cCGGUUGCg---CUGUGAGCG-Cg-CGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 156660 0.73 0.485357
Target:  5'- cGGCCAugGCGAC-Cg-GCGUGCCc-- -3'
miRNA:   3'- -CCGGUugCGCUGuGagCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 26111 0.73 0.485357
Target:  5'- uGGCCAccGCGCGGCuCguggCGCGgCGCCgagAGa -3'
miRNA:   3'- -CCGGU--UGCGCUGuGa---GCGC-GCGGa--UC- -5'
24674 5' -57.7 NC_005264.1 + 112671 0.73 0.504145
Target:  5'- cGGCCAcggaguauUGCGGCACgcccUCGUGCGCCa-- -3'
miRNA:   3'- -CCGGUu-------GCGCUGUG----AGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 102845 0.72 0.532893
Target:  5'- cGGCC-ACGCGGCcgucucGCUCGCG-GCCa-- -3'
miRNA:   3'- -CCGGuUGCGCUG------UGAGCGCgCGGauc -5'
24674 5' -57.7 NC_005264.1 + 149407 0.72 0.542608
Target:  5'- cGCCGcgucgcgucucgGCgGCGGCGgUCGCGCGCCg-- -3'
miRNA:   3'- cCGGU------------UG-CGCUGUgAGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 30380 0.72 0.542608
Target:  5'- cGCCGcgucgcgucucgGCgGCGGCGgUCGCGCGCCg-- -3'
miRNA:   3'- cCGGU------------UG-CGCUGUgAGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 145158 0.72 0.552381
Target:  5'- aGCCGcCGCGGC-CUCGgcUGCGCCUGa -3'
miRNA:   3'- cCGGUuGCGCUGuGAGC--GCGCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 34953 0.71 0.568124
Target:  5'- gGGCCGAgcgaguacuuagaGCGACGCUCGCGaCGUUUGu -3'
miRNA:   3'- -CCGGUUg------------CGCUGUGAGCGC-GCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 153980 0.71 0.568124
Target:  5'- gGGCCGAgcgaguacuuagaGCGACGCUCGCGaCGUUUGu -3'
miRNA:   3'- -CCGGUUg------------CGCUGUGAGCGC-GCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 13438 0.71 0.572078
Target:  5'- cGCCGagACGCGACGCggCG-GCGCCgaagGGg -3'
miRNA:   3'- cCGGU--UGCGCUGUGa-GCgCGCGGa---UC- -5'
24674 5' -57.7 NC_005264.1 + 132465 0.71 0.572078
Target:  5'- cGCCGagACGCGACGCggCG-GCGCCgaagGGg -3'
miRNA:   3'- cCGGU--UGCGCUGUGa-GCgCGCGGa---UC- -5'
24674 5' -57.7 NC_005264.1 + 100923 0.71 0.572078
Target:  5'- cGCaAGCgGCGGCGCcCGUGCGCCUAa -3'
miRNA:   3'- cCGgUUG-CGCUGUGaGCGCGCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 95356 0.71 0.591938
Target:  5'- gGGCCGACG-GGCGg-CGCGUGCCg-- -3'
miRNA:   3'- -CCGGUUGCgCUGUgaGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 14348 0.71 0.61191
Target:  5'- cGCCAACGCGACcagCGCGUcccauaGUCUAGc -3'
miRNA:   3'- cCGGUUGCGCUGugaGCGCG------CGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 31148 0.7 0.63194
Target:  5'- aGGCCcACGCuACGCUUGCGaGCCg-- -3'
miRNA:   3'- -CCGGuUGCGcUGUGAGCGCgCGGauc -5'
24674 5' -57.7 NC_005264.1 + 61240 0.7 0.63194
Target:  5'- uGGCgAugGCG-CGCUCcagcucacgGCGCGCCUc- -3'
miRNA:   3'- -CCGgUugCGCuGUGAG---------CGCGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 54561 0.7 0.641958
Target:  5'- cGGUCAGCGCGAUuCUCGUgggGCGCg--- -3'
miRNA:   3'- -CCGGUUGCGCUGuGAGCG---CGCGgauc -5'
24674 5' -57.7 NC_005264.1 + 131570 0.7 0.641958
Target:  5'- uGCauguGCGCGGCACcUG-GCGCCUAGg -3'
miRNA:   3'- cCGgu--UGCGCUGUGaGCgCGCGGAUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.