miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 5' -57.7 NC_005264.1 + 35002 0.66 0.875729
Target:  5'- uGCCGcgaGCGGCGCUCGaagaggaGCGCUg-- -3'
miRNA:   3'- cCGGUug-CGCUGUGAGCg------CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 43662 0.66 0.875729
Target:  5'- cGGUCGGCGCG-C---UGCGCGCCg-- -3'
miRNA:   3'- -CCGGUUGCGCuGugaGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 2496 0.66 0.875729
Target:  5'- uGGUCGGCG-GGC-CUCGCGCGaCUUc- -3'
miRNA:   3'- -CCGGUUGCgCUGuGAGCGCGC-GGAuc -5'
24674 5' -57.7 NC_005264.1 + 96241 0.66 0.868567
Target:  5'- cGG-CAACGCGGCGCagcccaGCGagaGCCUGu -3'
miRNA:   3'- -CCgGUUGCGCUGUGag----CGCg--CGGAUc -5'
24674 5' -57.7 NC_005264.1 + 86767 0.66 0.868567
Target:  5'- aGCCGu--CGACGCUCGCgGCGUCg-- -3'
miRNA:   3'- cCGGUugcGCUGUGAGCG-CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 80918 0.66 0.86784
Target:  5'- cGCCGacuACGCGACgaucguucugcugGCUCGCcCGCCc-- -3'
miRNA:   3'- cCGGU---UGCGCUG-------------UGAGCGcGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 115446 0.66 0.864172
Target:  5'- aGGUCGACGCGACACguaGCuuuauugacaacuggGgGCCa-- -3'
miRNA:   3'- -CCGGUUGCGCUGUGag-CG---------------CgCGGauc -5'
24674 5' -57.7 NC_005264.1 + 57891 0.66 0.861202
Target:  5'- gGGCCA---CGAgGCUCG-GCGCUUGGc -3'
miRNA:   3'- -CCGGUugcGCUgUGAGCgCGCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 25751 0.66 0.861202
Target:  5'- aGGCCA--GUGAUGCUCaCGCGCgUUGGg -3'
miRNA:   3'- -CCGGUugCGCUGUGAGcGCGCG-GAUC- -5'
24674 5' -57.7 NC_005264.1 + 58478 0.66 0.861202
Target:  5'- uGCC-GCGCGACAUUaacgcaUGCGCGCaagAGc -3'
miRNA:   3'- cCGGuUGCGCUGUGA------GCGCGCGga-UC- -5'
24674 5' -57.7 NC_005264.1 + 80464 0.66 0.861202
Target:  5'- aGCCcuGCGCccGGCACcggaUCGaCGCGCCUGc -3'
miRNA:   3'- cCGGu-UGCG--CUGUG----AGC-GCGCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 99919 0.66 0.861202
Target:  5'- cGGCCGcgcaagcccGCGCGGCuaagcugguggACUCGUGCcaacgugaCCUAGa -3'
miRNA:   3'- -CCGGU---------UGCGCUG-----------UGAGCGCGc-------GGAUC- -5'
24674 5' -57.7 NC_005264.1 + 147078 0.66 0.861202
Target:  5'- cGCCcggaGCcACGCUCGCGCGCa--- -3'
miRNA:   3'- cCGGuug-CGcUGUGAGCGCGCGgauc -5'
24674 5' -57.7 NC_005264.1 + 96272 0.66 0.853638
Target:  5'- aGCCAugacuccauCGUagacGCGCUCGUGCGCCUc- -3'
miRNA:   3'- cCGGUu--------GCGc---UGUGAGCGCGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 147159 0.66 0.853638
Target:  5'- cGCCAugGCGGaaguCGCUgGC-CGCCUu- -3'
miRNA:   3'- cCGGUugCGCU----GUGAgCGcGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 69662 0.66 0.853638
Target:  5'- aGGUCGggcACGCGGCGCUgGgGC-CUUGGu -3'
miRNA:   3'- -CCGGU---UGCGCUGUGAgCgCGcGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 160271 0.66 0.853638
Target:  5'- cGGCCAcccucAUGUGACGCUUGuCG-GCCa-- -3'
miRNA:   3'- -CCGGU-----UGCGCUGUGAGC-GCgCGGauc -5'
24674 5' -57.7 NC_005264.1 + 106614 0.66 0.853638
Target:  5'- aGCC-GCGCGACGCUCGCcaGUGaUCUc- -3'
miRNA:   3'- cCGGuUGCGCUGUGAGCG--CGC-GGAuc -5'
24674 5' -57.7 NC_005264.1 + 117611 0.66 0.853638
Target:  5'- cGGCCAugccuACGCuGCGCUCG-GCGUUcaUGGg -3'
miRNA:   3'- -CCGGU-----UGCGcUGUGAGCgCGCGG--AUC- -5'
24674 5' -57.7 NC_005264.1 + 77175 0.66 0.853638
Target:  5'- aGCCAcaacguucAUGUcGCGCUCGCGgGCCa-- -3'
miRNA:   3'- cCGGU--------UGCGcUGUGAGCGCgCGGauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.