miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 5' -57.7 NC_005264.1 + 93432 0.66 0.853638
Target:  5'- -uCCGACgGCGGCAg--GCGCGCCUAc -3'
miRNA:   3'- ccGGUUG-CGCUGUgagCGCGCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 96272 0.66 0.853638
Target:  5'- aGCCAugacuccauCGUagacGCGCUCGUGCGCCUc- -3'
miRNA:   3'- cCGGUu--------GCGc---UGUGAGCGCGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 156019 0.66 0.852871
Target:  5'- cGCCcg-GCGACGCUUGCGCgguggacGCCUc- -3'
miRNA:   3'- cCGGuugCGCUGUGAGCGCG-------CGGAuc -5'
24674 5' -57.7 NC_005264.1 + 129056 0.66 0.845883
Target:  5'- cGGCguGCGCG--GCUCGauuGCGCCUu- -3'
miRNA:   3'- -CCGguUGCGCugUGAGCg--CGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 41638 0.66 0.845883
Target:  5'- uGGCCAgAUGCGGCAg-CGCG-GCCg-- -3'
miRNA:   3'- -CCGGU-UGCGCUGUgaGCGCgCGGauc -5'
24674 5' -57.7 NC_005264.1 + 158358 0.66 0.845883
Target:  5'- cGCU--CGCGACcCUCGCGCGaCUGu -3'
miRNA:   3'- cCGGuuGCGCUGuGAGCGCGCgGAUc -5'
24674 5' -57.7 NC_005264.1 + 109896 0.66 0.845883
Target:  5'- cGGCgCAAUGCGcCGCggGCGCgGCCa-- -3'
miRNA:   3'- -CCG-GUUGCGCuGUGagCGCG-CGGauc -5'
24674 5' -57.7 NC_005264.1 + 116409 0.66 0.845883
Target:  5'- aGGCCGACGuCGAgCGCagggcggCGUGCaGCCUc- -3'
miRNA:   3'- -CCGGUUGC-GCU-GUGa------GCGCG-CGGAuc -5'
24674 5' -57.7 NC_005264.1 + 39331 0.66 0.845883
Target:  5'- cGCU--CGCGACcCUCGCGCGaCUGu -3'
miRNA:   3'- cCGGuuGCGCUGuGAGCGCGCgGAUc -5'
24674 5' -57.7 NC_005264.1 + 46222 0.66 0.843519
Target:  5'- uGGCCAACGaCGAacgugUUGCgaccggagaagaccGCGCCUGGg -3'
miRNA:   3'- -CCGGUUGC-GCUgug--AGCG--------------CGCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 126291 0.66 0.843519
Target:  5'- cGGCCAugccgcuuucgggcGCGCGGCcgaugGCUCcUGCGCCc-- -3'
miRNA:   3'- -CCGGU--------------UGCGCUG-----UGAGcGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 37339 0.67 0.837941
Target:  5'- uGGCC-GCGCaccccGACGUUCGcCGCGCCgccgAGg -3'
miRNA:   3'- -CCGGuUGCG-----CUGUGAGC-GCGCGGa---UC- -5'
24674 5' -57.7 NC_005264.1 + 48096 0.67 0.837941
Target:  5'- cGGCC-GCGCGgguucuGCACgCGCGCGgCUc- -3'
miRNA:   3'- -CCGGuUGCGC------UGUGaGCGCGCgGAuc -5'
24674 5' -57.7 NC_005264.1 + 87634 0.67 0.837941
Target:  5'- gGGCCGAUGCaGcCGCguggggCGCGgGaCCUGGc -3'
miRNA:   3'- -CCGGUUGCG-CuGUGa-----GCGCgC-GGAUC- -5'
24674 5' -57.7 NC_005264.1 + 156366 0.67 0.837941
Target:  5'- uGGCC-GCGCaccccGACGUUCGcCGCGCCgccgAGg -3'
miRNA:   3'- -CCGGuUGCG-----CUGUGAGC-GCGCGGa---UC- -5'
24674 5' -57.7 NC_005264.1 + 13613 0.67 0.837941
Target:  5'- cGGCCAGCGacaGugAC-CGCugGCGCaCUAc -3'
miRNA:   3'- -CCGGUUGCg--CugUGaGCG--CGCG-GAUc -5'
24674 5' -57.7 NC_005264.1 + 62979 0.67 0.837941
Target:  5'- cGCCAcCGCGGCuuuggcggACUCcaagGCGUGCUUGGc -3'
miRNA:   3'- cCGGUuGCGCUG--------UGAG----CGCGCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 52941 0.67 0.837941
Target:  5'- uGGCCGcgccCGCGGCGCaUUGCGcCGCggGGu -3'
miRNA:   3'- -CCGGUu---GCGCUGUG-AGCGC-GCGgaUC- -5'
24674 5' -57.7 NC_005264.1 + 76235 0.67 0.837137
Target:  5'- aGGCUgucgcgaGGCGCGACgAC-CGCGUGUCUc- -3'
miRNA:   3'- -CCGG-------UUGCGCUG-UGaGCGCGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 56498 0.67 0.835523
Target:  5'- cGCCAA-GCGGCAgUCagaaaauaucaucgGCGCGCCg-- -3'
miRNA:   3'- cCGGUUgCGCUGUgAG--------------CGCGCGGauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.