miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 5' -57.7 NC_005264.1 + 140 0.73 0.476089
Target:  5'- cGGCCGccuuaACGcCGGCGCgcaGCGCGCCg-- -3'
miRNA:   3'- -CCGGU-----UGC-GCUGUGag-CGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 640 0.67 0.795686
Target:  5'- aGG-CAGCGCGAUagagGCUCaCGCGCCc-- -3'
miRNA:   3'- -CCgGUUGCGCUG----UGAGcGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 2496 0.66 0.875729
Target:  5'- uGGUCGGCG-GGC-CUCGCGCGaCUUc- -3'
miRNA:   3'- -CCGGUUGCgCUGuGAGCGCGC-GGAuc -5'
24674 5' -57.7 NC_005264.1 + 3303 0.68 0.749902
Target:  5'- aGCUcGCGCGGgA-UCGCGCGCCg-- -3'
miRNA:   3'- cCGGuUGCGCUgUgAGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 3432 0.67 0.82982
Target:  5'- gGGCCGcgccCGCGcUGCUCGCaaaGCGCCa-- -3'
miRNA:   3'- -CCGGUu---GCGCuGUGAGCG---CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 4141 0.7 0.671939
Target:  5'- cGGCCGcuuguCGCGAUGCUUGC-CGCCc-- -3'
miRNA:   3'- -CCGGUu----GCGCUGUGAGCGcGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 4773 0.7 0.671939
Target:  5'- cGCCuucuGCGCGGCGCcguUCGCGCaCCUc- -3'
miRNA:   3'- cCGGu---UGCGCUGUG---AGCGCGcGGAuc -5'
24674 5' -57.7 NC_005264.1 + 5405 0.68 0.786779
Target:  5'- gGGCCAgcagggcguACGCGGCAucuguCUCGgCGuCGCCg-- -3'
miRNA:   3'- -CCGGU---------UGCGCUGU-----GAGC-GC-GCGGauc -5'
24674 5' -57.7 NC_005264.1 + 5626 0.68 0.746118
Target:  5'- gGGCC-GCGCGACGCUagguguccccacaGCGCGgCg-- -3'
miRNA:   3'- -CCGGuUGCGCUGUGAg------------CGCGCgGauc -5'
24674 5' -57.7 NC_005264.1 + 6145 0.66 0.875729
Target:  5'- gGGCC-GCGCGcccgucGCGCaUCGCGUGCa--- -3'
miRNA:   3'- -CCGGuUGCGC------UGUG-AGCGCGCGgauc -5'
24674 5' -57.7 NC_005264.1 + 6234 0.74 0.431145
Target:  5'- cGGCCGcCGCGAgACUUGC-CGCCUc- -3'
miRNA:   3'- -CCGGUuGCGCUgUGAGCGcGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 6850 0.67 0.82982
Target:  5'- cGCCAGCGCGcaaccuCugUCGUGCggGCUUGu -3'
miRNA:   3'- cCGGUUGCGCu-----GugAGCGCG--CGGAUc -5'
24674 5' -57.7 NC_005264.1 + 7068 0.67 0.804452
Target:  5'- cGCCGGC-CGGCGC-CGuCGCGCUgcgGGg -3'
miRNA:   3'- cCGGUUGcGCUGUGaGC-GCGCGGa--UC- -5'
24674 5' -57.7 NC_005264.1 + 7952 0.66 0.875729
Target:  5'- cGGCCGcgGCGUcuUugUCGC-UGCCUAGa -3'
miRNA:   3'- -CCGGU--UGCGcuGugAGCGcGCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 13438 0.71 0.572078
Target:  5'- cGCCGagACGCGACGCggCG-GCGCCgaagGGg -3'
miRNA:   3'- cCGGU--UGCGCUGUGa-GCgCGCGGa---UC- -5'
24674 5' -57.7 NC_005264.1 + 13613 0.67 0.837941
Target:  5'- cGGCCAGCGacaGugAC-CGCugGCGCaCUAc -3'
miRNA:   3'- -CCGGUUGCg--CugUGaGCG--CGCG-GAUc -5'
24674 5' -57.7 NC_005264.1 + 13692 0.68 0.768574
Target:  5'- cGCCAugGCccagggagaacuGGCAgCUCGUGCgGCUUGGg -3'
miRNA:   3'- cCGGUugCG------------CUGU-GAGCGCG-CGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 14348 0.71 0.61191
Target:  5'- cGCCAACGCGACcagCGCGUcccauaGUCUAGc -3'
miRNA:   3'- cCGGUUGCGCUGugaGCGCG------CGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 14456 0.68 0.759292
Target:  5'- aGG-CAugGCGGCAagccuCUCGCGUGCUUc- -3'
miRNA:   3'- -CCgGUugCGCUGU-----GAGCGCGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 15071 0.67 0.821526
Target:  5'- cGGCCGAU-CG-CACcuaugUCGCGCGCUUAu -3'
miRNA:   3'- -CCGGUUGcGCuGUG-----AGCGCGCGGAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.