miRNA display CGI


Results 21 - 40 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 5' -57.7 NC_005264.1 + 15725 0.67 0.821526
Target:  5'- aGCaagAACGCGGCACg-GCG-GCCUGGc -3'
miRNA:   3'- cCGg--UUGCGCUGUGagCGCgCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 16076 0.68 0.768574
Target:  5'- cGCC-GCGCGGCGCUUGCuGuUGCCg-- -3'
miRNA:   3'- cCGGuUGCGCUGUGAGCG-C-GCGGauc -5'
24674 5' -57.7 NC_005264.1 + 18043 0.68 0.749902
Target:  5'- uGCCGACGCGAaGCggCG-GCGCCg-- -3'
miRNA:   3'- cCGGUUGCGCUgUGa-GCgCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 18414 0.67 0.795686
Target:  5'- cGGCCGGCGCaGGCGCgcccucUCGCucgGCGCggGGu -3'
miRNA:   3'- -CCGGUUGCG-CUGUG------AGCG---CGCGgaUC- -5'
24674 5' -57.7 NC_005264.1 + 22130 0.68 0.786779
Target:  5'- gGGCUucaacgAGCGCGACGCgCGCcuuagauuGCGCCg-- -3'
miRNA:   3'- -CCGG------UUGCGCUGUGaGCG--------CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 23043 0.67 0.82982
Target:  5'- cGGCCGACG-GcACGCguUCGUGCuuGCUUGGg -3'
miRNA:   3'- -CCGGUUGCgC-UGUG--AGCGCG--CGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 24221 0.69 0.694746
Target:  5'- aGCCAGCGCgccgggauaguaaGACACUCcgGCGCcgaaguuguucuuguGCCUGGc -3'
miRNA:   3'- cCGGUUGCG-------------CUGUGAG--CGCG---------------CGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 24476 0.67 0.819006
Target:  5'- cGUCGGCGUGACGuugcgauagucgcgUUCGgGCGCCUu- -3'
miRNA:   3'- cCGGUUGCGCUGU--------------GAGCgCGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 25751 0.66 0.861202
Target:  5'- aGGCCA--GUGAUGCUCaCGCGCgUUGGg -3'
miRNA:   3'- -CCGGUugCGCUGUGAGcGCGCG-GAUC- -5'
24674 5' -57.7 NC_005264.1 + 26111 0.73 0.485357
Target:  5'- uGGCCAccGCGCGGCuCguggCGCGgCGCCgagAGa -3'
miRNA:   3'- -CCGGU--UGCGCUGuGa---GCGC-GCGGa--UC- -5'
24674 5' -57.7 NC_005264.1 + 27656 0.76 0.341692
Target:  5'- uGGCC-ACGCGGCGCUCGgaccgagguaCGCGgCUGGc -3'
miRNA:   3'- -CCGGuUGCGCUGUGAGC----------GCGCgGAUC- -5'
24674 5' -57.7 NC_005264.1 + 30237 0.75 0.372622
Target:  5'- cGGCCAGCGCGGCAaa-GCgGUGCCa-- -3'
miRNA:   3'- -CCGGUUGCGCUGUgagCG-CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 30380 0.72 0.542608
Target:  5'- cGCCGcgucgcgucucgGCgGCGGCGgUCGCGCGCCg-- -3'
miRNA:   3'- cCGGU------------UG-CGCUGUgAGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 30508 0.69 0.730834
Target:  5'- aGGCCAuugcgggaaGCGGCuCUCGCGCaGUUUGGc -3'
miRNA:   3'- -CCGGUug-------CGCUGuGAGCGCG-CGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 31148 0.7 0.63194
Target:  5'- aGGCCcACGCuACGCUUGCGaGCCg-- -3'
miRNA:   3'- -CCGGuUGCGcUGUGAGCGCgCGGauc -5'
24674 5' -57.7 NC_005264.1 + 33211 0.69 0.730834
Target:  5'- aGGCUg--GCGGCGCUCG-GCGUCUAc -3'
miRNA:   3'- -CCGGuugCGCUGUGAGCgCGCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 33689 0.7 0.661966
Target:  5'- uGGCUAACGCGcauCGCUCcgagcCGCGUCUGc -3'
miRNA:   3'- -CCGGUUGCGCu--GUGAGc----GCGCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 33940 0.67 0.804452
Target:  5'- aGGCCGugGCG-CGC-CGggacCGCGCCcgaUAGg -3'
miRNA:   3'- -CCGGUugCGCuGUGaGC----GCGCGG---AUC- -5'
24674 5' -57.7 NC_005264.1 + 34366 0.67 0.813068
Target:  5'- cGGCCaAGCGCGA-ACUUGCcGaCGCCa-- -3'
miRNA:   3'- -CCGG-UUGCGCUgUGAGCG-C-GCGGauc -5'
24674 5' -57.7 NC_005264.1 + 34953 0.71 0.568124
Target:  5'- gGGCCGAgcgaguacuuagaGCGACGCUCGCGaCGUUUGu -3'
miRNA:   3'- -CCGGUUg------------CGCUGUGAGCGC-GCGGAUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.