miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 5' -57.7 NC_005264.1 + 162688 0.66 0.875729
Target:  5'- cGGUCGGCGCG-C---UGCGCGCCg-- -3'
miRNA:   3'- -CCGGUUGCGCuGugaGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 160271 0.66 0.853638
Target:  5'- cGGCCAcccucAUGUGACGCUUGuCG-GCCa-- -3'
miRNA:   3'- -CCGGU-----UGCGCUGUGAGC-GCgCGGauc -5'
24674 5' -57.7 NC_005264.1 + 159775 0.68 0.749902
Target:  5'- cGCCAGuCGCGGCGagacaGCGUGCCa-- -3'
miRNA:   3'- cCGGUU-GCGCUGUgag--CGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 159379 0.7 0.661966
Target:  5'- cGUgGAUGCGGCAC-CGgGCGCCa-- -3'
miRNA:   3'- cCGgUUGCGCUGUGaGCgCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 159239 0.67 0.828998
Target:  5'- cGGCCcccCGCGGCGguaauucUUCGCGCcuCCUGGc -3'
miRNA:   3'- -CCGGuu-GCGCUGU-------GAGCGCGc-GGAUC- -5'
24674 5' -57.7 NC_005264.1 + 159203 0.74 0.448831
Target:  5'- cGGCCAuCGCGACGaaugUCaGCGCGCCc-- -3'
miRNA:   3'- -CCGGUuGCGCUGUg---AG-CGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 158358 0.66 0.845883
Target:  5'- cGCU--CGCGACcCUCGCGCGaCUGu -3'
miRNA:   3'- cCGGuuGCGCUGuGAGCGCGCgGAUc -5'
24674 5' -57.7 NC_005264.1 + 158243 0.68 0.740414
Target:  5'- cGCCGcCGCGGCGCUgGCGgggaggGCCUGc -3'
miRNA:   3'- cCGGUuGCGCUGUGAgCGCg-----CGGAUc -5'
24674 5' -57.7 NC_005264.1 + 157946 0.74 0.457822
Target:  5'- cGGCCAGCGUGGCcucgaACUcCGCGUGUCg-- -3'
miRNA:   3'- -CCGGUUGCGCUG-----UGA-GCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 156660 0.73 0.485357
Target:  5'- cGGCCAugGCGAC-Cg-GCGUGCCc-- -3'
miRNA:   3'- -CCGGUugCGCUGuGagCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 156366 0.67 0.837941
Target:  5'- uGGCC-GCGCaccccGACGUUCGcCGCGCCgccgAGg -3'
miRNA:   3'- -CCGGuUGCG-----CUGUGAGC-GCGCGGa---UC- -5'
24674 5' -57.7 NC_005264.1 + 156019 0.66 0.852871
Target:  5'- cGCCcg-GCGACGCUUGCGCgguggacGCCUc- -3'
miRNA:   3'- cCGGuugCGCUGUGAGCGCG-------CGGAuc -5'
24674 5' -57.7 NC_005264.1 + 155787 0.73 0.476089
Target:  5'- cGGCCGGCGcCGucgcCGCUUGCGCGCa--- -3'
miRNA:   3'- -CCGGUUGC-GCu---GUGAGCGCGCGgauc -5'
24674 5' -57.7 NC_005264.1 + 154907 0.75 0.397037
Target:  5'- cGGCCGugGaCGACGCguggacgCGCGCGUugCUAGc -3'
miRNA:   3'- -CCGGUugC-GCUGUGa------GCGCGCG--GAUC- -5'
24674 5' -57.7 NC_005264.1 + 154029 0.66 0.875729
Target:  5'- uGCCGcgaGCGGCGCUCGaagaggaGCGCUg-- -3'
miRNA:   3'- cCGGUug-CGCUGUGAGCg------CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 153980 0.71 0.568124
Target:  5'- gGGCCGAgcgaguacuuagaGCGACGCUCGCGaCGUUUGu -3'
miRNA:   3'- -CCGGUUg------------CGCUGUGAGCGC-GCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 152967 0.67 0.804452
Target:  5'- aGGCCGugGCG-CGC-CGggacCGCGCCcgaUAGg -3'
miRNA:   3'- -CCGGUugCGCuGUGaGC----GCGCGG---AUC- -5'
24674 5' -57.7 NC_005264.1 + 152667 0.73 0.485357
Target:  5'- uGCCGACGacaaGAUACUCGCcGagGCCUGGa -3'
miRNA:   3'- cCGGUUGCg---CUGUGAGCG-Cg-CGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 149407 0.72 0.542608
Target:  5'- cGCCGcgucgcgucucgGCgGCGGCGgUCGCGCGCCg-- -3'
miRNA:   3'- cCGGU------------UG-CGCUGUgAGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 147159 0.66 0.853638
Target:  5'- cGCCAugGCGGaaguCGCUgGC-CGCCUu- -3'
miRNA:   3'- cCGGUugCGCU----GUGAgCGcGCGGAuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.