miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24674 5' -57.7 NC_005264.1 + 106704 1.1 0.0019
Target:  5'- cGGCCAACGCGACACUCGCGCGCCUAGu -3'
miRNA:   3'- -CCGGUUGCGCUGUGAGCGCGCGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 61240 0.7 0.63194
Target:  5'- uGGCgAugGCG-CGCUCcagcucacgGCGCGCCUc- -3'
miRNA:   3'- -CCGgUugCGCuGUGAG---------CGCGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 48355 0.7 0.661966
Target:  5'- cGCCAugGCGGC-CUCGuUGCGCa--- -3'
miRNA:   3'- cCGGUugCGCUGuGAGC-GCGCGgauc -5'
24674 5' -57.7 NC_005264.1 + 116657 0.66 0.882682
Target:  5'- cGCCGGCGU---GCUCgGCGaucaGCCUAGa -3'
miRNA:   3'- cCGGUUGCGcugUGAG-CGCg---CGGAUC- -5'
24674 5' -57.7 NC_005264.1 + 125261 0.74 0.431145
Target:  5'- cGGCCGcCGCGAgACUUGC-CGCCUc- -3'
miRNA:   3'- -CCGGUuGCGCUgUGAGCGcGCGGAuc -5'
24674 5' -57.7 NC_005264.1 + 159203 0.74 0.448831
Target:  5'- cGGCCAuCGCGACGaaugUCaGCGCGCCc-- -3'
miRNA:   3'- -CCGGUuGCGCUGUg---AG-CGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 119167 0.73 0.476089
Target:  5'- cGGCCGccuuaACGcCGGCGCgcaGCGCGCCg-- -3'
miRNA:   3'- -CCGGU-----UGC-GCUGUGag-CGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 155787 0.73 0.476089
Target:  5'- cGGCCGGCGcCGucgcCGCUUGCGCGCa--- -3'
miRNA:   3'- -CCGGUUGC-GCu---GUGAGCGCGCGgauc -5'
24674 5' -57.7 NC_005264.1 + 149407 0.72 0.542608
Target:  5'- cGCCGcgucgcgucucgGCgGCGGCGgUCGCGCGCCg-- -3'
miRNA:   3'- cCGGU------------UG-CGCUGUgAGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 31148 0.7 0.63194
Target:  5'- aGGCCcACGCuACGCUUGCGaGCCg-- -3'
miRNA:   3'- -CCGGuUGCGcUGUGAGCGCgCGGauc -5'
24674 5' -57.7 NC_005264.1 + 100923 0.71 0.572078
Target:  5'- cGCaAGCgGCGGCGCcCGUGCGCCUAa -3'
miRNA:   3'- cCGgUUG-CGCUGUGaGCGCGCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 156660 0.73 0.485357
Target:  5'- cGGCCAugGCGAC-Cg-GCGUGCCc-- -3'
miRNA:   3'- -CCGGUugCGCUGuGagCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 60906 0.77 0.279054
Target:  5'- gGGCCGACGCcGCcaguUUCGCGCGCCa-- -3'
miRNA:   3'- -CCGGUUGCGcUGu---GAGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 132465 0.71 0.572078
Target:  5'- cGCCGagACGCGACGCggCG-GCGCCgaagGGg -3'
miRNA:   3'- cCGGU--UGCGCUGUGa-GCgCGCGGa---UC- -5'
24674 5' -57.7 NC_005264.1 + 30237 0.75 0.372622
Target:  5'- cGGCCAGCGCGGCAaa-GCgGUGCCa-- -3'
miRNA:   3'- -CCGGUUGCGCUGUgagCG-CGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 26111 0.73 0.485357
Target:  5'- uGGCCAccGCGCGGCuCguggCGCGgCGCCgagAGa -3'
miRNA:   3'- -CCGGU--UGCGCUGuGa---GCGC-GCGGa--UC- -5'
24674 5' -57.7 NC_005264.1 + 95356 0.71 0.591938
Target:  5'- gGGCCGACG-GGCGg-CGCGUGCCg-- -3'
miRNA:   3'- -CCGGUUGCgCUGUgaGCGCGCGGauc -5'
24674 5' -57.7 NC_005264.1 + 33689 0.7 0.661966
Target:  5'- uGGCUAACGCGcauCGCUCcgagcCGCGUCUGc -3'
miRNA:   3'- -CCGGUUGCGCu--GUGAGc----GCGCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 81685 0.75 0.380646
Target:  5'- uGGCCGugGUGAUcagCGCGUGCCUGu -3'
miRNA:   3'- -CCGGUugCGCUGugaGCGCGCGGAUc -5'
24674 5' -57.7 NC_005264.1 + 58118 0.73 0.46691
Target:  5'- cGGCgCugcuGCGCGAC-CUCGCGCaGCCg-- -3'
miRNA:   3'- -CCG-Gu---UGCGCUGuGAGCGCG-CGGauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.