Results 21 - 40 of 196 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24674 | 5' | -57.7 | NC_005264.1 | + | 24221 | 0.69 | 0.694746 |
Target: 5'- aGCCAGCGCgccgggauaguaaGACACUCcgGCGCcgaaguuguucuuguGCCUGGc -3' miRNA: 3'- cCGGUUGCG-------------CUGUGAG--CGCG---------------CGGAUC- -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 48355 | 0.7 | 0.661966 |
Target: 5'- cGCCAugGCGGC-CUCGuUGCGCa--- -3' miRNA: 3'- cCGGUugCGCUGuGAGC-GCGCGgauc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 156660 | 0.73 | 0.485357 |
Target: 5'- cGGCCAugGCGAC-Cg-GCGUGCCc-- -3' miRNA: 3'- -CCGGUugCGCUGuGagCGCGCGGauc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 81685 | 0.75 | 0.380646 |
Target: 5'- uGGCCGugGUGAUcagCGCGUGCCUGu -3' miRNA: 3'- -CCGGUugCGCUGugaGCGCGCGGAUc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 159775 | 0.68 | 0.749902 |
Target: 5'- cGCCAGuCGCGGCGagacaGCGUGCCa-- -3' miRNA: 3'- cCGGUU-GCGCUGUgag--CGCGCGGauc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 30508 | 0.69 | 0.730834 |
Target: 5'- aGGCCAuugcgggaaGCGGCuCUCGCGCaGUUUGGc -3' miRNA: 3'- -CCGGUug-------CGCUGuGAGCGCG-CGGAUC- -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 61240 | 0.7 | 0.63194 |
Target: 5'- uGGCgAugGCG-CGCUCcagcucacgGCGCGCCUc- -3' miRNA: 3'- -CCGgUugCGCuGUGAG---------CGCGCGGAuc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 30237 | 0.75 | 0.372622 |
Target: 5'- cGGCCAGCGCGGCAaa-GCgGUGCCa-- -3' miRNA: 3'- -CCGGUUGCGCUGUgagCG-CGCGGauc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 35041 | 0.69 | 0.721173 |
Target: 5'- uGGCUcGCGCGACG-UCGUcaGCCUAGa -3' miRNA: 3'- -CCGGuUGCGCUGUgAGCGcgCGGAUC- -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 60906 | 0.77 | 0.279054 |
Target: 5'- gGGCCGACGCcGCcaguUUCGCGCGCCa-- -3' miRNA: 3'- -CCGGUUGCGcUGu---GAGCGCGCGGauc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 33689 | 0.7 | 0.661966 |
Target: 5'- uGGCUAACGCGcauCGCUCcgagcCGCGUCUGc -3' miRNA: 3'- -CCGGUUGCGCu--GUGAGc----GCGCGGAUc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 66220 | 0.69 | 0.701639 |
Target: 5'- cGGCCAGCGaagGACuugGCgagcUGCGgGCCUAGc -3' miRNA: 3'- -CCGGUUGCg--CUG---UGa---GCGCgCGGAUC- -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 132465 | 0.71 | 0.572078 |
Target: 5'- cGCCGagACGCGACGCggCG-GCGCCgaagGGg -3' miRNA: 3'- cCGGU--UGCGCUGUGa-GCgCGCGGa---UC- -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 149407 | 0.72 | 0.542608 |
Target: 5'- cGCCGcgucgcgucucgGCgGCGGCGgUCGCGCGCCg-- -3' miRNA: 3'- cCGGU------------UG-CGCUGUgAGCGCGCGGauc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 119167 | 0.73 | 0.476089 |
Target: 5'- cGGCCGccuuaACGcCGGCGCgcaGCGCGCCg-- -3' miRNA: 3'- -CCGGU-----UGC-GCUGUGag-CGCGCGGauc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 125261 | 0.74 | 0.431145 |
Target: 5'- cGGCCGcCGCGAgACUUGC-CGCCUc- -3' miRNA: 3'- -CCGGUuGCGCUgUGAGCGcGCGGAuc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 13692 | 0.68 | 0.768574 |
Target: 5'- cGCCAugGCccagggagaacuGGCAgCUCGUGCgGCUUGGg -3' miRNA: 3'- cCGGUugCG------------CUGU-GAGCGCG-CGGAUC- -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 64408 | 0.68 | 0.749902 |
Target: 5'- cGGCCAAgGcCGACGC-CGCGgGCa--- -3' miRNA: 3'- -CCGGUUgC-GCUGUGaGCGCgCGgauc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 124653 | 0.68 | 0.746118 |
Target: 5'- gGGCC-GCGCGACGCUagguguccccacaGCGCGgCg-- -3' miRNA: 3'- -CCGGuUGCGCUGUGAg------------CGCGCgGauc -5' |
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24674 | 5' | -57.7 | NC_005264.1 | + | 33211 | 0.69 | 0.730834 |
Target: 5'- aGGCUg--GCGGCGCUCG-GCGUCUAc -3' miRNA: 3'- -CCGGuugCGCUGUGAGCgCGCGGAUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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