Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24675 | 3' | -59.1 | NC_005264.1 | + | 128908 | 0.73 | 0.389923 |
Target: 5'- -cGGcGCGCCACGgcCUUCCCAgCCCUGg- -3' miRNA: 3'- caCU-CGCGGUGC--GAAGGGU-GGGACag -5' |
|||||||
24675 | 3' | -59.1 | NC_005264.1 | + | 135797 | 0.66 | 0.76288 |
Target: 5'- gGUG-GCGCUACGCgUUUCCACaguggagagccuCCUGUg -3' miRNA: 3'- -CACuCGCGGUGCG-AAGGGUG------------GGACAg -5' |
|||||||
24675 | 3' | -59.1 | NC_005264.1 | + | 142589 | 0.68 | 0.663171 |
Target: 5'- -cGAG-GCCGCGCcgcaaccccugCCCACCC-GUCa -3' miRNA: 3'- caCUCgCGGUGCGaa---------GGGUGGGaCAG- -5' |
|||||||
24675 | 3' | -59.1 | NC_005264.1 | + | 142694 | 0.68 | 0.634976 |
Target: 5'- uUGGGCGCCggcgGCGCgccacgCCUGCCCgcaucGUCg -3' miRNA: 3'- cACUCGCGG----UGCGaa----GGGUGGGa----CAG- -5' |
|||||||
24675 | 3' | -59.1 | NC_005264.1 | + | 143405 | 0.68 | 0.645057 |
Target: 5'- aUGAGCGCCucgcgccuuauACGCU--UCAgCCUGUCa -3' miRNA: 3'- cACUCGCGG-----------UGCGAagGGUgGGACAG- -5' |
|||||||
24675 | 3' | -59.1 | NC_005264.1 | + | 152847 | 0.69 | 0.614816 |
Target: 5'- aGUGuagaGGCGUCACGCggucuaaCCCACUCUGcCg -3' miRNA: 3'- -CAC----UCGCGGUGCGaa-----GGGUGGGACaG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home