miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24675 3' -59.1 NC_005264.1 + 11306 0.67 0.743959
Target:  5'- -aGGGCGuCCACGCcgCCCAUgaguucuagCUUGUCc -3'
miRNA:   3'- caCUCGC-GGUGCGaaGGGUG---------GGACAG- -5'
24675 3' -59.1 NC_005264.1 + 128908 0.73 0.389923
Target:  5'- -cGGcGCGCCACGgcCUUCCCAgCCCUGg- -3'
miRNA:   3'- caCU-CGCGGUGC--GAAGGGU-GGGACag -5'
24675 3' -59.1 NC_005264.1 + 46281 0.72 0.432636
Target:  5'- cUGAGCGCCGCaGCUcgCUCAUCCggcGUCu -3'
miRNA:   3'- cACUCGCGGUG-CGAa-GGGUGGGa--CAG- -5'
24675 3' -59.1 NC_005264.1 + 89836 0.7 0.52549
Target:  5'- -gGGGCGCCAggaGCUUUCUgcgguguCCCUGUCu -3'
miRNA:   3'- caCUCGCGGUg--CGAAGGGu------GGGACAG- -5'
24675 3' -59.1 NC_005264.1 + 62304 0.69 0.584688
Target:  5'- -cGAGCGUCGucCGgacuagaCCCGCCCUGUCg -3'
miRNA:   3'- caCUCGCGGU--GCgaa----GGGUGGGACAG- -5'
24675 3' -59.1 NC_005264.1 + 142694 0.68 0.634976
Target:  5'- uUGGGCGCCggcgGCGCgccacgCCUGCCCgcaucGUCg -3'
miRNA:   3'- cACUCGCGG----UGCGaa----GGGUGGGa----CAG- -5'
24675 3' -59.1 NC_005264.1 + 143405 0.68 0.645057
Target:  5'- aUGAGCGCCucgcgccuuauACGCU--UCAgCCUGUCa -3'
miRNA:   3'- cACUCGCGG-----------UGCGAagGGUgGGACAG- -5'
24675 3' -59.1 NC_005264.1 + 41953 0.68 0.683204
Target:  5'- ----cCGCCGCGUggucaaaucucgUUCCGCCCUGUCu -3'
miRNA:   3'- cacucGCGGUGCGa-----------AGGGUGGGACAG- -5'
24675 3' -59.1 NC_005264.1 + 11344 0.68 0.685199
Target:  5'- --uAGCGCCACGaguugCgCUAUCCUGUCg -3'
miRNA:   3'- cacUCGCGGUGCgaa--G-GGUGGGACAG- -5'
24675 3' -59.1 NC_005264.1 + 108125 1.08 0.001606
Target:  5'- cGUGAGCGCCACGCUUCCCACCCUGUCc -3'
miRNA:   3'- -CACUCGCGGUGCGAAGGGUGGGACAG- -5'
24675 3' -59.1 NC_005264.1 + 31496 0.68 0.685199
Target:  5'- uGUGGGCGCguucccaaCGCGCUUCacaCACCCa--- -3'
miRNA:   3'- -CACUCGCG--------GUGCGAAGg--GUGGGacag -5'
24675 3' -59.1 NC_005264.1 + 123261 0.65 0.795756
Target:  5'- --cGGCGCCACGCgaagguagaucagUCCCGgCUUGcCg -3'
miRNA:   3'- cacUCGCGGUGCGa------------AGGGUgGGACaG- -5'
24675 3' -59.1 NC_005264.1 + 68024 0.66 0.789497
Target:  5'- -gGAGCGCCAaagagcggauaacCGCUUCCgUGCCCg--- -3'
miRNA:   3'- caCUCGCGGU-------------GCGAAGG-GUGGGacag -5'
24675 3' -59.1 NC_005264.1 + 96346 0.66 0.753471
Target:  5'- -cGAgcGCGCCGCGCagCCCGCCaagcauugaGUCu -3'
miRNA:   3'- caCU--CGCGGUGCGaaGGGUGGga-------CAG- -5'
24675 3' -59.1 NC_005264.1 + 52961 0.66 0.76288
Target:  5'- ---uGCGCCGCGggguaUUCCGCUCUGUCc -3'
miRNA:   3'- cacuCGCGGUGCga---AGGGUGGGACAG- -5'
24675 3' -59.1 NC_005264.1 + 77928 0.75 0.272926
Target:  5'- ---cGCGCCugGCUcuUCCCGCCCUcccGUCc -3'
miRNA:   3'- cacuCGCGGugCGA--AGGGUGGGA---CAG- -5'
24675 3' -59.1 NC_005264.1 + 98032 0.66 0.78135
Target:  5'- cGUGAGCcCUGCGCUUCCgguGCCCaUGg- -3'
miRNA:   3'- -CACUCGcGGUGCGAAGGg--UGGG-ACag -5'
24675 3' -59.1 NC_005264.1 + 103841 0.66 0.753471
Target:  5'- cUGAGCGCCAaGCUUCUgGgCCCgGcCg -3'
miRNA:   3'- cACUCGCGGUgCGAAGGgU-GGGaCaG- -5'
24675 3' -59.1 NC_005264.1 + 142589 0.68 0.663171
Target:  5'- -cGAG-GCCGCGCcgcaaccccugCCCACCC-GUCa -3'
miRNA:   3'- caCUCgCGGUGCGaa---------GGGUGGGaCAG- -5'
24675 3' -59.1 NC_005264.1 + 152847 0.69 0.614816
Target:  5'- aGUGuagaGGCGUCACGCggucuaaCCCACUCUGcCg -3'
miRNA:   3'- -CAC----UCGCGGUGCGaa-----GGGUGGGACaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.