Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24675 | 3' | -59.1 | NC_005264.1 | + | 46281 | 0.72 | 0.432636 |
Target: 5'- cUGAGCGCCGCaGCUcgCUCAUCCggcGUCu -3' miRNA: 3'- cACUCGCGGUG-CGAa-GGGUGGGa--CAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 128908 | 0.73 | 0.389923 |
Target: 5'- -cGGcGCGCCACGgcCUUCCCAgCCCUGg- -3' miRNA: 3'- caCU-CGCGGUGC--GAAGGGU-GGGACag -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 9882 | 0.73 | 0.389923 |
Target: 5'- -cGGcGCGCCACGgcCUUCCCAgCCCUGg- -3' miRNA: 3'- caCU-CGCGGUGC--GAAGGGU-GGGACag -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 77928 | 0.75 | 0.272926 |
Target: 5'- ---cGCGCCugGCUcuUCCCGCCCUcccGUCc -3' miRNA: 3'- cacuCGCGGugCGA--AGGGUGGGA---CAG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 95485 | 0.77 | 0.215192 |
Target: 5'- -cGGGCGCUACGUUUUCCGCCCUcuUCg -3' miRNA: 3'- caCUCGCGGUGCGAAGGGUGGGAc-AG- -5' |
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24675 | 3' | -59.1 | NC_005264.1 | + | 108125 | 1.08 | 0.001606 |
Target: 5'- cGUGAGCGCCACGCUUCCCACCCUGUCc -3' miRNA: 3'- -CACUCGCGGUGCGAAGGGUGGGACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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