miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24675 5' -50.6 NC_005264.1 + 30432 0.66 0.995307
Target:  5'- gCGGagGAGGucuCGGggGAgcCGCG-GGCCCc -3'
miRNA:   3'- -GCCa-CUCCu--GUCuuUU--GUGCuUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 91744 0.66 0.995307
Target:  5'- aGGgccGAGGGCGGcuguuGACAaauagauacaaGggGCCCa -3'
miRNA:   3'- gCCa--CUCCUGUCuu---UUGUg----------CuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 33892 0.66 0.995234
Target:  5'- gCGGcgGuGGAacuccUAGAAGACAUGGcggagcgAGCCCa -3'
miRNA:   3'- -GCCa-CuCCU-----GUCUUUUGUGCU-------UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 132324 0.66 0.995087
Target:  5'- gGGUcguggagcuccccgGAGGACGGcc-GCGCGGAGCa- -3'
miRNA:   3'- gCCA--------------CUCCUGUCuuuUGUGCUUCGgg -5'
24675 5' -50.6 NC_005264.1 + 13297 0.66 0.995087
Target:  5'- gGGUcguggagcuccccgGAGGACGGcc-GCGCGGAGCa- -3'
miRNA:   3'- gCCA--------------CUCCUGUCuuuUGUGCUUCGgg -5'
24675 5' -50.6 NC_005264.1 + 30895 0.66 0.994543
Target:  5'- ---cGGGGACgcgucgggGGAGGACuGCGAGGCCg -3'
miRNA:   3'- gccaCUCCUG--------UCUUUUG-UGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 105342 0.66 0.994543
Target:  5'- aGGUGuucaccGGGCGGcugcuGCACGAGGUgCg -3'
miRNA:   3'- gCCACu-----CCUGUCuuu--UGUGCUUCGgG- -5'
24675 5' -50.6 NC_005264.1 + 49624 0.66 0.994543
Target:  5'- uCGGUGGGGuacCAGggGGCcaaGguGCUCg -3'
miRNA:   3'- -GCCACUCCu--GUCuuUUGug-CuuCGGG- -5'
24675 5' -50.6 NC_005264.1 + 43516 0.66 0.994543
Target:  5'- aGGUGGGaGACcgAGGAAggGCuCGGGuGCCCa -3'
miRNA:   3'- gCCACUC-CUG--UCUUU--UGuGCUU-CGGG- -5'
24675 5' -50.6 NC_005264.1 + 25665 0.66 0.994543
Target:  5'- uCGGcacgucUGGGGGCAGcagaagggacGGGACGCGcauGCCCc -3'
miRNA:   3'- -GCC------ACUCCUGUC----------UUUUGUGCuu-CGGG- -5'
24675 5' -50.6 NC_005264.1 + 162543 0.66 0.994543
Target:  5'- aGGUGGGaGACcgAGGAAggGCuCGGGuGCCCa -3'
miRNA:   3'- gCCACUC-CUG--UCUUU--UGuGCUU-CGGG- -5'
24675 5' -50.6 NC_005264.1 + 149921 0.66 0.994543
Target:  5'- ---cGGGGACgcgucgggGGAGGACuGCGAGGCCg -3'
miRNA:   3'- gccaCUCCUG--------UCUUUUG-UGCUUCGGg -5'
24675 5' -50.6 NC_005264.1 + 3636 0.67 0.993683
Target:  5'- gGGUGGGGguuucugggagGCGGuuuGAGCugGggGCg- -3'
miRNA:   3'- gCCACUCC-----------UGUCu--UUUGugCuuCGgg -5'
24675 5' -50.6 NC_005264.1 + 157211 0.67 0.993498
Target:  5'- -uGUGGGGACAccuagcguCGCGcGGCCCg -3'
miRNA:   3'- gcCACUCCUGUcuuuu---GUGCuUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 38184 0.67 0.993498
Target:  5'- -uGUGGGGACAccuagcguCGCGcGGCCCg -3'
miRNA:   3'- gcCACUCCUGUcuuuu---GUGCuUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 75028 0.67 0.992716
Target:  5'- cCGuGUuGGGGCuaucGAuuguCGCGAAGCCCg -3'
miRNA:   3'- -GC-CAcUCCUGu---CUuuu-GUGCUUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 20245 0.67 0.992716
Target:  5'- aCGG-GuGGGCAGggGuuGCGGcgcGGCCUc -3'
miRNA:   3'- -GCCaCuCCUGUCuuUugUGCU---UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 63669 0.67 0.992716
Target:  5'- gCGGUGGGuggcucuguaGAUAGAAAcagGCGCGGcaaGGUCCc -3'
miRNA:   3'- -GCCACUC----------CUGUCUUU---UGUGCU---UCGGG- -5'
24675 5' -50.6 NC_005264.1 + 67981 0.67 0.992716
Target:  5'- gCGGgGAGGAUuuguGAAGGCACc-GGCUCg -3'
miRNA:   3'- -GCCaCUCCUGu---CUUUUGUGcuUCGGG- -5'
24675 5' -50.6 NC_005264.1 + 37792 0.67 0.991635
Target:  5'- aGGcGAGcGGCGGAGAagagGCGCGccGCCg -3'
miRNA:   3'- gCCaCUC-CUGUCUUU----UGUGCuuCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.